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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|76487711|76488132|-|2|circRNA|RHBDF2|ENST00000592123.5|3,2 | circRHBDF2(3,2) | RHBDF2 | LSVQPPFHRLRLDTGASVQSKEKTRTCSKALHSKTQEAAGKLRLEGSQTRGLLLGDWL | LEGSQTR | No | Alternative | Junction | 7 | 2 | CTG | TGA | TransCirc | No |
chr17|76718732|76725855|-|5|circRNA|JMJD6|ENST00000445478.6|6,5,4,3,2 | circJMJD6(6,5,4,3,2) | JMJD6 | MVGNGDTTSQDDCVSKERSSSRITWKGQMLYSCLWKNLWSGMKDLTSPWFC | NLWSGMK | No | Alternative | Junction | 7 | 1 | ATG | TGA | NA | No |
chr17|78031515|78051448|+|2|circRNA|TNRC6C|ENST00000588847.5|4,5 | circTNRC6C(4,5) | TNRC6C | LAGKNPLHRPFAAKWKLMMVPQLGGTQATITIKL | LMMVPQLGGTQATITIKL | No | Alternative | Alternative | 18 | 1 | CTG | TAA | TransCirc | No |
chr17|78031515|78051448|+|2|circRNA|TNRC6C|ENST00000588847.5|4,5 | circTNRC6C(4,5) | TNRC6C | LELQQVKEVVMVLATTMKEALGGKEREKAEGEIKGL | EVVMVLATTMKEALGGK | No | Alternative | Alternative | 17 | 1 | CTG | TAG | TransCirc | No |
chr17|78031515|78051448|+|2|circRNA|TNRC6C|ENST00000588847.5|4,5 | circTNRC6C(4,5) | TNRC6C | LLLVLLLLPRVAMLGVGPQIRRTSHPPGVSLQSPNPNTGEMDKDQIQPGVQEGEIGQIHRLSLDTWGMGKKMDLDGMLTVIGQGLVGMTPRDLGTVAGATAQIQRPIQVQTGGRL | VAMLGVGPQIR | No | Alternative | Alternative | 11 | 1 | CTG | TAA | TransCirc | No |
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