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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|74439744|74443912|+|2|circRNA|GPRC5C|ENST00000392627.5|2,3 | circGPRC5C(2,3) | GPRC5C | LGLRPLLRHPRGLPGDQVQPRAKLPGGHVPHPGRGL | HPRGLPGDQVQPR | No | Alternative | Alternative | 13 | 1 | CTG | TGA | TransCirc | No |
chr17|74439744|74443912|+|2|circRNA|GPRC5C|ENST00000392627.5|2,3 | circGPRC5C(2,3) | GPRC5C | LPRVCLCGEARLLHLCLSALPLWGSVRHLLLLSGGSRLCPQLPGPEEPRAPGLGDLHCGSAADPGRGHHQYRVADHHPGSGQWRGRPSGQQQRRLGRGLPLCHRQHGLCHGTHLRHAAAAGCLPGGLARPVWPLQALA | APGLGDLHCGSAADPGR | No | Alternative | Alternative | 17 | 1 | CTG | TAA | TransCirc | No |
chr17|7496763|7503292|+|13|circRNA|POLR2A|ENST00000617998.4|5,6,7,8,9,10,11,12,13,14,15,16,17 | circPOLR2A(5,6,7,8,9,10,11,12,13,14,15,16,17) | POLR2A | LSGCGRIGRCSGSSSQLETARAMVAVGGTSPGSGVLA | AMVAVGGTSPGSGVLA | No | Alternative | Junction | 16 | 3 | TTG | TAG | NA | No |
chr17|75208526|75218306|+|6|circRNA|NUP85|NM_024844|2,3,4,5,6,7 | circNUP85(2,3,4,5,6,7) | NUP85 | LALSSSISLTGSGSMCARWTVCRQMFWAVRIQANMTASGTC | QMFWAVRIQANMTASGT | No | Alternative | Junction | 17 | 1 | CTG | TGA | TransCirc | No |
chr17|75393550|75393765|-|1|circRNA|GRB2|ENST00000392562.5|2 | circGRB2(2) | GRB2 | MEAIAKYDFKATADDELSFKRGDILKGGIVCPRVPERVPEERRG | GGIVCPR | No | Alternative | Junction | 7 | 3 | ATG | TAA | TransCirc | No |
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