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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|37440504|37465541|+|6|circRNA|TADA2A|ENST00000615182.4|6,7,8,9,10,11 | circTADA2A(6,7,8,9,10,11) | TADA2A | MERRYPKEVQDLYETMRRFARIVGPVEHDKFIESHACRM | FIESHACRM | No | Junction | Junction | 9 | 3 | ATG | TAG | TransCirc | No |
chr17|39490556|39492890|+|2|circRNA|CDK12|ENST00000584632.5|3,4 | circCDK12(3,4) | CDK12 | MEKEDKQKATGGNAVWTSLTLLGLLEKEPMAKYIKPRTKTQSKRNSSFKTCEEREGTEDTSLTHRPSSPSRAPWWRSVSPRLSRTKGNHTTSATI | ATGGNAVWTSLTLLGLLEKEPMAK | Yes | Alternative | Junction | 24 | 3 | ATG | TAA | TransCirc | No |
chr17|39723318|39725853|+|7|circRNA|ERBB2|ENST00000584601.5|21,22,23,24,25,26,27 | circERBB2(21,22,23,24,25,26,27) | ERBB2 | LGPNLTMGSQPGRSLTCWKRGSGCPSPPSAPLMST | LGPNLTMGSQPGR | No | Alternative | Alternative | 13 | 1 | TTG | TGA | TransCirc | No |
chr17|39984293|39990197|+|5|circRNA|PSMD3|NM_002809|2,3,4,5,6 | circPSMD3(2,3,4,5,6) | PSMD3 | LSASNRRHQGARETARESGFRQGAEIRAAGPADAAFHITPPQPLCSV | ETARESGFR | No | Alternative | Junction | 9 | 1 | CTG | TAA | TransCirc | No |
chr17|40027066|40027382|-|1|ciRNA|MED24|ENST00000394126.5|15 | ciMED24(15) | MED24 | LPPSGSLRPVRPQSLGWAGAAAWRETVQPQVQRWQAPRPPRERGERPGRGLKGRR | ETVQPQVQRWQAPRPPR | No | Junction | Junction | 17 | 1 | TTG | TAA | NA | No |
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