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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|32653842|32755662|-|9|circRNA|MYO1D|NM_015194|19,18,17,16,15,14,13,12,11 | circMYO1D(19,18,17,16,15,14,13,12,11) | MYO1D | MSSFPVTSVRLTTSTIRSLLTSWSNSTKGSLQSLMMLA | MSSFPVTSVR | No | Alternative | Junction | 10 | 2 | ATG | TGA | TransCirc | No |
chr17|32711987|32721189|-|2|circRNA|MYO1D|NM_015194|16,15 | circMYO1D(16,15) | MYO1D | LSSFYKRNHITFVASNPMTRNLHRYLMMNAAGTK | YLMMNAAGTK | No | Alternative | Junction | 10 | 3 | TTG | TAG | TransCirc | No |
chr17|32933173|32936447|+|3|circRNA|TMEM98|ENST00000394642.7|3,4,5 | circTMEM98(3,4,5) | TMEM98 | LSHSDREACCHDNGLWGQDEDFSQCQRHHCGGQADQPQAHCGPHWCHGDPV | LSHSDREACCHDNGLWGQDEDFSQCQR | No | Alternative | Junction | 27 | 3 | TTG | TGA | TransCirc | No |
chr17|34939182|34942906|-|5|circRNA|CCT6B|NM_001193530|9,8,7,6,5 | circCCT6B(9,8,7,6,5) | CCT6B | MDFVLSKMPLKMVDPRISFGSWCPSSRYEEASRRCIYPYLQRFTGI | MDFVLSK | No | Alternative | Junction | 7 | 2 | ATG | TGA | NA | No |
chr17|35135248|35140066|-|8|circRNA|NLE1|ENST00000586869.5|9,8,7,6,5,4,3,2 | circNLE1(9,8,7,6,5,4,3,2) | NLE1 | LTPASWLVPPLTSPSSCGMAGRARGSPATGFLCPRC | LTPASWLVPPLTSPSSCGMAGRAR | No | Junction | Junction | 24 | 2 | CTG | TGA | TransCirc | No |
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