top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|29650653|29703062|-|10|circRNA|SSH2|ENST00000269033.7|12,11,10,9,8,7,6,5,4,3 | circSSH2(12,11,10,9,8,7,6,5,4,3) | SSH2 | LSIITFGYMMKRQRISWRTGMTLTNSSLKQTSARAF | QTSARAF | No | Alternative | Junction | 7 | 3 | TTG | TAA | TransCirc | No |
chr17|29671934|29703062|-|6|circRNA|SSH2|ENST00000269033.7|8,7,6,5,4,3 | circSSH2(8,7,6,5,4,3) | SSH2 | MRAISTQINPQSMNGMQCKMYSPTGPTLQLSSPTSSARAF | MYSPTGPTLQLSSPTSSARAF | No | Junction | Junction | 21 | 3 | ATG | TAA | TransCirc | No |
chr17|30384988|30385236|+|1|circRNA|CPD|ENST00000225719.8|2 | circCPD(2) | CPD | LVSLIVQEMKTRLSKMESQTAHIGMMWKVCAFWKSAWWLSGSKLSF | MESQTAHIGMMWK | No | Alternative | Junction | 13 | 3 | CTG | TGA | TransCirc | No |
chr17|30843912|30855327|+|3|circRNA|ATAD5|ENST00000578295.5|5,6,7 | circATAD5(5,6,7) | ATAD5 | MSGLPDLLKRQIAKKAAALDVYNAVSTSFQRVVHVQQKDDGFCYNNRFKSYCFKASREKSEETSVFE | DDGFCYNNRFK | No | Junction | Junction | 11 | 2 | ATG | TGA | TransCirc | No |
chr17|31258343|31265339|+|5|circRNA|NF1|ENST00000356175.7|31,32,33,34,35 | circNF1(31,32,33,34,35) | NF1 | LKTLSIFYQAGTSKAGNPIFYYVARRWLASVSLRTASVQ | WLASVSLRTASVQ | No | Alternative | Junction | 13 | 2 | TTG | TAG | TransCirc | No |
Page 1 of 1
bottom of page