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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|90726566|90726812|+|1|circRNA|CDK14|ENST00000449528.5|6 | circCDK14(6) | CDK14 | LRTMLALTLRPPPLAKSHLKLGGTPAPARYVSQRCLHGTAREWTQ | CLHGTAR | No | Alternative | Junction | 7 | 2 | CTG | TGA | TransCirc | No |
chr7|92102826|92105677|+|1|ciRNA|AKAP9|ENST00000356239.7|46 | ciAKAP9(46) | AKAP9 | LGQDGEEGRNLLHLGHEANTPIPFETNVFLSLIKGTRASPTLQHSQHILIANLRVFLFSSYLICPLFSVLFSFHYFSPFLCLSAFPIYFCLPSPYTPFIPQAGT | LGQDGEEGR | No | Alternative | Alternative | 9 | 1 | TTG | TGA | NA | No |
chr7|92671425|92833690|-|4|circRNA|CDK6|ENST00000265734.8|5,4,3,2 | circCDK6(5,4,3,2) | CDK6 | LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKCNDSGLRRAWAEAM | CNDSGLRR | No | Alternative | Junction | 8 | 1 | CTG | TAA | TransCirc | No |
chr7|92671425|92833690|-|4|circRNA|CDK6|ENST00000265734.8|5,4,3,2 | circCDK6(5,4,3,2) | CDK6 | LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKCNDSGLRRAWAEAM | KCNDSGLR | No | Junction | Junction | 8 | 1 | CTG | TAA | TransCirc | No |
chr7|93291702|93297243|+|4|circRNA|CCDC132|ENST00000305866.9|13,14,15,16 | circCCDC132(13,14,15,16) | CCDC132 | LEKNFVVASLKFYRNLLENKVSIISRITIACYTRQLYSMPCRPVQSTMGSYAQLL | ITIACYTR | No | Junction | Junction | 8 | 3 | TTG | TAG | TransCirc | No |
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