top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr16|31076245|31081701|+|1|circRNA|ZNF646|NM_014699|2 | circZNF646(2) | ZNF646 | MKAWSLPKTLQGKVLMGLKATWKVMGTVCRLNLKGTNVGLRGMRPISRVIKRAEALGKDWKGRMPVYLTTWTSQVRKVVALTSAIASLGWMKTRSQPLANPTPLPTLPMLSLAGRLGPLTHALTVGILSPMPLAC | GTNVGLR | No | Alternative | Alternative | 7 | 2 | ATG | TGA | NA | No |
chr16|31076245|31081701|+|1|circRNA|ZNF646|NM_014699|2 | circZNF646(2) | ZNF646 | MKAWSLPKTLQGKVLMGLKATWKVMGTVCRLNLKGTNVGLRGMRPISRVIKRAEALGKDWKGRMPVYLTTWTSQVRKVVALTSAIASLGWMKTRSQPLANPTPLPTLPMLSLAGRLGPLTHALTVGILSPMPLAC | GTNVGLRGMRPISR | No | Alternative | Alternative | 14 | 2 | ATG | TGA | NA | No |
chr16|31076245|31081701|+|1|circRNA|ZNF646|NM_014699|2 | circZNF646(2) | ZNF646 | MLLRAAAGTGPHAPRKPLHTSRVRRCPLTPGAKGLALVKAGKTRQNIQKRHLTVNLYLTPGQLRVRGKICPPDKEKAWQATQVLRMVQTAGDPPLTLPEPLLSPSQPAAFLATWNSIWLNQ | KPLHTSRVR | No | Alternative | Alternative | 9 | 2 | ATG | TAG | NA | No |
chr16|31493073|31493466|-|1|ciRNA|C16orf58|ENST00000570164.5|9 | ciC16orf58(9) | C16orf58 | LFSGWLGMPAFAVLHPVSGLASPARHHRHPHSPHSDYTLASLARPHLSVLGSSLLLNRHGVGVGV | HGVGVGV | No | Alternative | Junction | 7 | 1 | CTG | TGA | NA | No |
chr16|31493073|31493466|-|1|ciRNA|C16orf58|ENST00000570164.5|9 | ciC16orf58(9) | C16orf58 | MCLMGEGRMGRWGSWMTGYRKKGWIWCVWVMAEGERKRGDLSEAWIISVHWVAVQWLVGHACLCCPPPREWPSVSRSSPPPPTLPSLRLHTGLPGKAPPLCPGFFIAAEQTWGWCGCVRKERVYNMKQM | APPLCPGFFIAAEQTWGWCGCVRK | No | Alternative | Junction | 24 | 3 | ATG | TAA | NA | No |
Page 1 of 1
bottom of page