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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|77241690|77262307|+|6|circRNA|CCDC146|ENST00000285871.4|4,5,6,7,8,9 | circCCDC146(4,5,6,7,8,9) | CCDC146 | LDLNLRNSLIDKQNYHDELSRKQREKERDFRNLRKMELLLKVSWDALRQTQALHQRLLLEHTRVRGPTATECQTFH | VRGPTATECQTFH | No | Alternative | Junction | 13 | 2 | TTG | TGA | TransCirc | No |
chr7|77583554|77600806|+|5|circRNA|PTPN12|ENST00000248594.10|4,5,6,7,8 | circPTPN12(4,5,6,7,8) | PTPN12 | MKMFLFVFIAGRLWAKSICSNSRTFSKYSNRFLEDDMGV | SICSNSR | No | Alternative | Junction | 7 | 2 | ATG | TAA | TransCirc | No |
chr7|77585542|77627675|+|9|circRNA|PTPN12|ENST00000248594.10|5,6,7,8,9,10,11,12,13 | circPTPN12(5,6,7,8,9,10,11,12,13) | PTPN12 | LCGLQCNTIKQSFSYSTRRIPEFRHTSKARPLAS | IPEFRHTSK | No | Alternative | Alternative | 9 | 1 | TTG | TGA | NA | No |
chr7|77618479|77627675|+|2|circRNA|PTPN12|ENST00000248594.10|12,13 | circPTPN12(12,13) | PTPN12 | LQPPEPHPVPPILTPSPPSAFPTVTTVWQDNDRYHPKPVLHMVSSEQHSADLNRNYSKSTELPGKNESTIEQIDKKLERNLSFEIKKVPLQEGPKSFDGNTLLNRGHAIKIKSASPCIADKISKPQELSSDLNVGDTSQNSCVDCSVTQSNKVSVTPPEESQNSDTPPRPDRLPLDEKGHVTWSFHGPENAIPIPDLSEGNSSDINYQTRKTVSLTPSPTTQVETPDLVDHDNTSPLFRTPLSFTNPLHSDDSDSDERNSDGAVTQNKTNISTASATVSAATSTESISTRKVLPMSIARHNIAGTTHSGAEKE | HNIAGTTHSGAEKE | No | Junction | Junction | 14 | 2 | CTG | TGA | TransCirc | No |
chr7|8022482|8060248|+|3|circRNA|GLCCI1|NM_138426|3,4,5 | circGLCCI1(3,4,5) | GLCCI1 | MGRKKYPRHLAVGQKRVQKRGHISVLRHGGVLIN | GHISVLR | No | Alternative | Junction | 7 | 2 | ATG | TAA | TransCirc | No |
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