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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr16|2097147|2097984|-|4|circRNA|PKD1|ENST00000262304.8|34,33,32,31 | circPKD1(34,33,32,31) | PKD1 | LPRGSAAQPLPKTPTWKRTCSAACGWEPEPHTCRAAGAGHRQLPGLVRAGQLLPHVLRPPR | AGQLLPHVLRPPR | No | Alternative | Junction | 13 | 1 | TTG | TGA | TransCirc | No |
chr16|22075486|22085750|+|4|circRNA|C16orf52|ENST00000569656.5|2,3,4,5 | circC16orf52(2,3,4,5) | C16orf52 | LGSFYAKSTLLGHSYPATKIKEHSLWASCDSVKQSMDETGRASLPGFPRSGSPHCFLSSWESFH | LGSFYAKSTLLGHSYPATK | No | Alternative | Junction | 19 | 3 | CTG | TGA | TransCirc | No |
chr16|22225653|22225975|+|1|circRNA|EEF2K|NM_013302|2 | circEEF2K(2) | EEF2K | LHLSSNSGCAGYCLGKTGTPGTWQTKISSSAWKALMAASPPELAMMVILMGTATMRKVTSSAPSRMTQARTRMSIPRLISTTAT | ALMAASPPELAMMVILMGTATMR | No | Alternative | Alternative | 23 | 1 | CTG | TAA | TransCirc | No |
chr16|22225653|22225975|+|1|circRNA|EEF2K|NM_013302|2 | circEEF2K(2) | EEF2K | LHLSSNSGCAGYCLGKTGTPGTWQTKISSSAWKALMAASPPELAMMVILMGTATMRKVTSSAPSRMTQARTRMSIPRLISTTAT | ALMAASPPELAMMVILMGTATMRK | No | Alternative | Alternative | 24 | 1 | CTG | TAA | TransCirc | No |
chr16|22225653|22225975|+|1|circRNA|EEF2K|NM_013302|2 | circEEF2K(2) | EEF2K | LHLSSNSGCAGYCLGKTGTPGTWQTKISSSAWKALMAASPPELAMMVILMGTATMRKVTSSAPSRMTQARTRMSIPRLISTTAT | ISSSAWKALMAASPPELAMMVILMGTATMR | No | Alternative | Alternative | 30 | 1 | CTG | TAA | TransCirc | No |
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