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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|75561328|75573901|-|6|circRNA|HIP1|NM_001243198|13,12,11,10,9,8 | circHIP1(13,12,11,10,9,8) | HIP1 | LSIQLPGHVPLCVRDGSRAVPPRPADPGHLGLQPPL | LSIQLPGHVPLCVR | No | Junction | Junction | 14 | 3 | CTG | TGA | TransCirc | No |
chr7|75592525|75599183|-|1|ciRNA|HIP1|NM_001243198|2 | ciHIP1(2) | HIP1 | LTTICREWVCLELGLGRSGSRIPYMGNLRCGEIEGAPEQGQVGLRKKWGVEVYRKGILNKDCCCQGKQKAG | IPYMGNLRCGEIEGAPEQGQVGLR | No | Alternative | Alternative | 24 | 2 | CTG | TAA | NA | No |
chr7|75592525|75599183|-|1|ciRNA|HIP1|NM_001243198|2 | ciHIP1(2) | HIP1 | LTTICREWVCLELGLGRSGSRIPYMGNLRCGEIEGAPEQGQVGLRKKWGVEVYRKGILNKDCCCQGKQKAG | SGSRIPYMGNLR | No | Alternative | Alternative | 12 | 2 | CTG | TAA | NA | No |
chr7|75592529|75599183|-|1|ciRNA|HIP1|NM_001243198|2 | ciHIP1(2).A | HIP1 | LGAGSVPCSGWVQAQSPAVTGRAHPLFSISFWMLLGRPTLREVSSWGLRSGPGCLAQLQEGATLHRPGPCSF | LGAGSVPCSGWVQAQSPAVTGR | No | Alternative | Junction | 22 | 1 | CTG | TGA | NA | No |
chr7|76425051|76434155|+|5|circRNA|ZP3|ENST00000336517.8|2,3,4,5,6 | circZP3(2,3,4,5,6) | ZP3 | LSTVSLMPLLHSKFLDPGQIHSSSQWMSSTLLMTPETWVEPAILRRPYSPYWWSVRRPL | FLDPGQIHSSSQWMSSTLLMTPETW | No | Alternative | Junction | 25 | 3 | TTG | TGA | NA | No |
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