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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|155828181|155833585|-|3|circRNA|SLC33A1|NM_001190992|6,5,4 | circSLC33A1(6,5,4) | SLC33A1 | MVIMWSPLFVFSLDLVGGSFLVQNLKSYRMKDHLRGNAKGTINIYATGHSSKIIAWVRICPTGLVDS | GTINIYATGHSSKIIAWVR | No | Junction | Junction | 19 | 2 | ATG | TAA | TransCirc | No |
chr3|155828181|155842619|-|5|circRNA|SLC33A1|NM_001190992|6,5,4,3,2 | circSLC33A1(6,5,4,3,2) | SLC33A1 | MVIMWSPLFVFSLDLVGGSFLVQNLKSYRMKDHLRGNAKGTINIYATGHSSKISFFSGELYF | GTINIYATGHSSKISFFSGELYF | No | Junction | Junction | 23 | 2 | ATG | TAA | TransCirc | No |
chr3|156677656|156678614|+|1|circRNA|TIPARP|ENST00000486483.5|2 | circTIPARP(2) | TIPARP | LIGQMLGTRYRKPILPLKLQNEWFQSKITAFHQKPSVGRWQIPHQLTSRLIFCTQFQVMFLLVLTA | LIGQMLGTR | No | Alternative | Alternative | 9 | 1 | CTG | TAG | TransCirc | No |
chr3|156677656|156678614|+|1|circRNA|TIPARP|ENST00000486483.5|2 | circTIPARP(2) | TIPARP | LSCHIIGRSKGQLLKSGRVYSMILRSTWKDFTVTQKMIE | LSCHIIGR | No | Alternative | Alternative | 8 | 1 | CTG | TGA | TransCirc | No |
chr3|15685225|15686309|-|3|circRNA|ANKRD28|ENST00000383777.5|19,18,17 | circANKRD28(19,18,17) | ANKRD28 | MHYFNMVLSAYFGIAGAGRLYTCLLPVDTLVFLEPFCSQQHLWMQIQPQQTIMDIRHFTGLATMQQMVIQNAYGY | MHYFNMVLSAYFGIAGAGR | No | Alternative | Junction | 19 | 2 | ATG | TAA | TransCirc | No |
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