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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|149160279|149162139|+|1|ciRNA|HPS3|NM_001308258|10 | ciHPS3(10) | HPS3 | LLKKEERKCFITIQMTCFVMMRRASQHRNVFCFEE | KCFITIQMTCFVMMR | No | Alternative | Alternative | 15 | 2 | TTG | TAG | NA | No |
chr3|149846043|149895561|+|1|new|RNF13|ENST00000481585|49518|0 | NA | RNF13 | LGGEKGYFVSRLMVNLLFLCGYAEGRENQFSRELFHFALGKV | LGGEKGYFVSR | No | Alternative | Alternative | 11 | 2 | CTG | TAG | NA | No |
chr3|149846043|149895561|+|1|new|RNF13|ENST00000481585|49518|0 | NA | RNF13 | LGVELMFYAVLCTELLVQCLQYQKQLTGSNGGVYSEICRWVALNIKILTVIAPSQLLFKCNGSSCVTCEIPSKLILSTESYPLVAQKVILKPLFSVVGGLKWGLCYVRMRNH | LGVELMFYAVLCTELLVQCLQYQK | No | Alternative | Alternative | 24 | 1 | TTG | TAA | NA | No |
chr3|149846043|149895561|+|1|new|RNF13|ENST00000481585|49518|0 | NA | RNF13 | LGVELMFYAVLCTELLVQCLQYQKQLTGSNGGVYSEICRWVALNIKILTVIAPSQLLFKCNGSSCVTCEIPSKLILSTESYPLVAQKVILKPLFSVVGGLKWGLCYVRMRNH | WGLCYVRMR | No | Alternative | Alternative | 9 | 1 | TTG | TAA | NA | No |
chr3|149846043|149895561|+|1|new|RNF13|ENST00000481585|49518|0 | NA | RNF13 | LIKTKRMSTGSFMISLCLNLSISAQIKKKLLIIFPSFILDTMICCHPSLLFSFNVEVTSKLFMSAD | RMSTGSFMISLCLNLSISAQIK | No | Alternative | Alternative | 22 | 1 | TTG | TAA | NA | No |
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