top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr22|24113565|24171995|+|8|circRNA|CABIN1|ENST00000263119.9|27,28,29,30,31,32,33,34 | circCABIN1(27,28,29,30,31,32,33,34) | CABIN1 | LPPQLLSPALRQHQLPPWTSPRTLGLPGHTGLKLPPAWPLWAQTEARTAQP | LPPAWPLWAQTEAR | No | Junction | Junction | 14 | 2 | CTG | TAG | NA | No |
chr22|24119366|24119698|+|1|circRNA|CABIN1|ENST00000263119.9|28 | circCABIN1(28) | CABIN1 | LESTEGFRAAEQGVQKPAAETPASACIPGKPSASTPTLWDGKKRGDLPGEPVAFPQGLPAGAEEQRQFLTEQCIASFRLCLSRFPQHYKSLYRLAFLYTYSKTHREKTRSHWRVQKASGLQSKVSRSLLQKPQPLLASLASPQHPHPPCGMGRREGTSQGSQWPSPRGCRLVLRSSGSFSQSSASPPSACA | SHWRVQK | No | Alternative | Junction | 7 | 3 | TTG | TGA | TransCirc | No |
chr22|24302194|24313466|+|2|circRNA|SPECC1L|ENST00000437398.5|2,3 | circSPECC1L(2,3) | SPECC1L | MAGGVTVTNGVKGKKSTCPSAAPSASAPAMTTVENKSKISTDLLVNASRRGSPE | ISTDLLVNASR | No | Junction | Junction | 11 | 1 | ATG | TGA | TransCirc | No |
chr22|24500106|24502213|+|2|circRNA|UPB1|ENST00000326010.9|2,3 | circUPB1(2,3) | UPB1 | MCGVNIICFQEAWRSLICPGKLSKLPPEKTLNCRDMPLKQRRSS | MCGVNIICFQEAWR | No | Junction | Junction | 14 | 1 | ATG | TGA | NA | No |
chr22|24897971|24912752|+|4|circRNA|SGSM1|ENST00000610372.4|19,20,21,22 | circSGSM1(19,20,21,22) | SGSM1 | MAAWMTGRAARPPHLRMRLPGRSWPCRTAWRVTSWPTRAWTSSCPSRAAWTWPCLKRTML | MAAWMTGRAARPPHLR | No | Alternative | Alternative | 16 | 1 | ATG | TGA | TransCirc | No |
Page 1 of 1
bottom of page