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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr21|37472683|37480826|+|3|circRNA|DYRK1A|ENST00000462274.1|2,3,4 | circDYRK1A(2,3,4) | DYRK1A | MDRYEIDSLIGKGSFGQEERLQHANLHLFGLHRHFHSMLLAFRWLDRCPIHISTVTVASQT | LQHANLHLFGLHRHFHSMLLAFR | Yes | Alternative | Junction | 23 | 1 | ATG | TAA | riboCIRC,TransCirc | No |
chr21|37472683|37493163|+|6|circRNA|DYRK1A|NM_101395|4,5,6,7,8,9 | circDYRK1A(4,5,6,7,8,9) | DYRK1A | LGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEEERLQHANLHLFGLHRHFHSMLLAFRWLDRCPIHISTVTVASQT | LGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEEER | No | Junction | Junction | 36 | 1 | CTG | TAA | riboCIRC,TransCirc | No |
chr21|39180284|39181878|-|2|circRNA|PSMG1|ENST00000331573.7|3,2 | circPSMG1(3,2) | PSMG1 | LSSFVMNSGVWEEVGCAKLWNEWCRTTDTTHLSSTEAFCVFYHLKSNPSGSAAPSKTNKNIFGSFFARKISVLQVYNCYRK | NIFGSFFARK | No | Alternative | Junction | 10 | 3 | CTG | TAA | TransCirc | No |
chr21|39196497|39210147|-|6|circRNA|BRWD1|ENST00000333229.6|41,40,39,38,37,36 | circBRWD1(41,40,39,38,37,36) | BRWD1 | MHLLKEKVPLLHLQEKIQKVIFQGVRLIGHFLQSQPWHKKLLQRIILKWN | EKVPLLHLQEK | No | Alternative | Alternative | 11 | 1 | ATG | TGA | TransCirc | No |
chr21|39206107|39212707|-|4|circRNA|BRWD1|ENST00000333229.6|37,36,35,34 | circBRWD1(37,36,35,34) | BRWD1 | LILKLVKNSMKNFEEARGSSNGKIVKVTVSLTKVSG | VTVSLTK | No | Alternative | Alternative | 7 | 2 | CTG | TGA | riboCIRC,TransCirc | No |
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