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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr20|62905886|62911614|-|4|circRNA|DIDO1|NM_001193369|6,5,4,3 | circDIDO1(6,5,4,3) | DIDO1 | LRGAAAGGACLSPWRILVSPRPAPPQTPRQPPRAAWKALLRPEAAPSLLPQL | ILVSPRPAPPQTPR | No | Alternative | Alternative | 14 | 2 | TTG | TGA | TransCirc | No |
chr20|62909698|62914406|-|3|circRNA|DIDO1|NM_001193369|4,3,2 | circDIDO1(4,3,2) | DIDO1 | MAIVWAFLRLEGGFWKGMGKTISAQTAPFCKCRMRLIQKRQISRKLNGDLEMLMAPIVQV | KLNGDLEMLMAPIVQV | No | Alternative | Alternative | 16 | 3 | ATG | TAG | TransCirc | No |
chr20|63202286|63203807|-|1|circRNA|YTHDF1|ENST00000370339.7|4 | circYTHDF1(4) | YTHDF1 | LAPGITRGLCRRPQSPSRHPLHRLPHSPSRWLSLSQHSPQLWLNRSIRALSSHPRPAGLPHATETRRLGRAEGLAAIATLLETSSLILPPASNPTPSLKN | LAPGITR | No | Alternative | Alternative | 7 | 2 | TTG | TGA | TransCirc | No |
chr20|63533729|63534151|-|1|ciRNA|PTK6|ENST00000542869.2|3 | ciPTK6(3) | PTK6 | LATLGEASGTLQGPGSGLSGCFMLGWGQPPGESTLVSDTQKPPTQADRGPKSEAKSRLPVLASDWHFLKDEPLRSRSALTWSRGVRLGGHRLAFPTGRGWPGSMGGVLTH | LAFPTGR | No | Alternative | Junction | 7 | 2 | CTG | TGA | NA | No |
chr20|63533729|63534151|-|1|ciRNA|PTK6|ENST00000542869.2|3 | ciPTK6(3) | PTK6 | LGPTGGKPMVLQSTGVCLSWGWGQETIPGPGHSRRGQRHSAGSWLRSVWVFHAGLGAAPRRVHPCVRHSETPNPG | LGPTGGKPMVLQSTGVCLSWGWGQETIPGPGHSR | No | Alternative | Alternative | 34 | 1 | CTG | TGA | NA | No |
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