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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr20|51473979|51475660|-|2|circRNA|NFATC2|ENST00000371564.7|5,4 | circNFATC2(5,4) | NFATC2 | MATWKTSLWDFRSSLGQLMSGSLSRTPSTRCTESRGKLSPPPAMRR | GKLSPPPAMR | No | Alternative | Alternative | 10 | 1 | ATG | TAG | TransCirc | No |
chr20|51473979|51523596|-|4|circRNA|NFATC2|NM_001258296|5,4,3,2 | circNFATC2(5,4,3,2) | NFATC2 | LHLTPSSANLANNVTSNQPRRGQLPGPPLARAPSGLPLLIAWCQAEAFVRRGLGCPAARSLTPALPEPLAAALISRGTPGPRLPGWVPPCGWLCRDHGCPEQPRHGLALWDPPQDVEDQP | LHLTPSSANLANNVTSNQPR | No | Junction | Junction | 20 | 3 | CTG | TGA | riboCIRC,TransCirc | No |
chr20|51516783|51523596|-|2|circRNA|NFATC2|NM_001258296|3,2 | circNFATC2(3,2) | NFATC2 | LSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQNLANNVTSNQPRRGQLPGPPLARAPSGLPLLIAWCQAEAFVRRGLGCPAARSLTPALPEPLAAALISRGTPGPRLPGWVPPCGWLCRDHGCPEQPRHGLALWDPPQDVEDQP | GAVKAPTGGHPVVQNLANNVTSNQPR | No | Junction | Junction | 26 | 2 | CTG | TGA | riboCIRC,TransCirc | No |
chr20|5175182|5178956|+|3|circRNA|CDS2|NM_003818|3,4,5 | circCDS2(3,4,5) | CDS2 | LCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIDGRTGG | FISFTLYLIDGR | No | Junction | Junction | 12 | 2 | CTG | TGA | TransCirc | No |
chr20|5175182|5178956|+|3|circRNA|CDS2|NM_003818|3,4,5 | circCDS2(3,4,5) | CDS2 | LCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIDGRTGG | FISFTLYLIDGRTGG | No | Junction | Junction | 15 | 2 | CTG | TGA | TransCirc | No |
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