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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr20|49115781|49154071|-|10|circRNA|STAU1|ENST00000371856.6|13,12,11,10,9,8,7,6,5,4 | circSTAU1(13,12,11,10,9,8,7,6,5,4) | STAU1 | LNILKLLSELDQQSTEMPRTGNGPMSVKHNPYCRTKCTVHETWKKTNV | TGNGPMSVKHNPYCR | No | Junction | Junction | 15 | 1 | CTG | TAA | TransCirc | No |
chr20|49280570|49289044|+|1|ciRNA|ZFAS1|NR_036658|3 | ciZFAS1(3).A | ZFAS1 | LLHGPVNMAALSISKPRRERHSRDGCLKSIPSTPFKEKVTPLLFCVPWGHYLHVWSHGWTLQQISILWPETMIVCFPSADLYNPSIN | LLHGPVNMAALSISKPRR | No | Alternative | Alternative | 18 | 2 | TTG | TGA | NA | No |
chr20|49849578|49855581|+|3|circRNA|SLC9A8|ENST00000417961.5|6,7,8 | circSLC9A8(6,7,8) | SLC9A8 | MLVFGESILNDAVSIVLTKVTSFKILVPSPCLLFLGRQSPLL | ILVPSPCLLFLGR | No | Alternative | Junction | 13 | 2 | ATG | TAG | TransCirc | No |
chr20|49849578|49855581|+|3|circRNA|SLC9A8|ENST00000417961.5|6,7,8 | circSLC9A8(6,7,8) | SLC9A8 | MLVFGESILNDAVSIVLTKVTSFKILVPSPCLLFLGRQSPLL | ILVPSPCLLFLGRQSPLL | No | Alternative | Junction | 18 | 2 | ATG | TAG | TransCirc | No |
chr20|49849578|49855581|+|3|circRNA|SLC9A8|ENST00000417961.5|6,7,8 | circSLC9A8(6,7,8) | SLC9A8 | MLVFGESILNDAVSIVLTKVTSFKILVPSPCLLFLGRQSPLL | MLVFGESILNDAVSIVLTK | No | Alternative | Junction | 19 | 2 | ATG | TAG | TransCirc | No |
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