top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|42579106|42609584|+|2|circRNA|MTA3|ENST00000405592.5|4,5 | circMTA3(4,5) | MTA3 | LTDKQKHQLKHRELFLSRQYESLPATHIRLQVATWKQK | QYESLPATHIRLQVATWK | No | Junction | Junction | 18 | 3 | TTG | TAG | TransCirc | No |
chr2|42695764|42723035|+|7|circRNA|MTA3|ENST00000405592.5|11,12,13,14,15,16,17 | circMTA3(11,12,13,14,15,16,17) | MTA3 | LQTPTTKRMLTTPNHTSLSILGKRNYSHHNGLDASLEIID | NYSHHNGLDASLEIID | No | Junction | Junction | 16 | 3 | CTG | TAG | TransCirc | No |
chr2|42770205|42770492|-|1|ciRNA|HAAO|ENST00000294973.10|5 | ciHAAO(5) | HAAO | LHQHLMPWEKVSPPRVEILAQRAHCQAGGRGEQQPRWEGKDGRHTAV | AHCQAGGRGEQQPR | No | Alternative | Alternative | 14 | 1 | CTG | TGA | NA | No |
chr2|42770205|42770492|-|1|ciRNA|HAAO|ENST00000294973.10|5 | ciHAAO(5) | HAAO | LLSWGSASAPDALGESLPSQGGDPGPESPLPGRGEGGAAAPLGGKGWQTHSCVRAP | GEGGAAAPLGGK | No | Alternative | Alternative | 12 | 1 | TTG | TGA | NA | No |
chr2|43225796|43226264|-|1|ciRNA|ZFP36L2|NM_006887|1 | ciZFP36L2(1) | ZFP36L2 | LDFASVPRFWGTPLPPCLSGRESPGVCKRVSERPGGGEGGKEGAGVAVEFLHCRPRPRCPGLPGQASRRPPRQPGRRITCRNPARPTVGVLPSPAPSSKILLVLRVYRWRVEAESGSAKSGGKKGKESGWEFLCGSPRVCLRRPGSGPGRQQPL | ITCRNPARPTVGVLPSPAPSSK | No | Alternative | Junction | 22 | 3 | TTG | TAG | NA | No |
Page 1 of 1
bottom of page