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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|100818519|100820296|-|3|circRNA|EPHB4|ENST00000360620.7|7,6,5 | circEPHB4(7,6,5) | EPHB4 | LFPGHPVGLCWTTRSNTMRSLCPGHLQAPVRRRVLPAMPSQ | LFPGHPVGLCWTTRSNTMR | No | Alternative | Junction | 19 | 1 | CTG | TAG | NA | No |
chr7|100856867|100859161|+|3|circRNA|SLC12A9|ENST00000540482.5|5,6,7 | circSLC12A9(5,6,7) | SLC12A9 | LKDPSRAIPLGTIVAVAYTFFVYVLLFFLSSFTCDRCHRAQWAPGPAPGLRLEPAVWLPAAGPCGWGLHPGSRPLCPGLIPHIPAGLWLPGLCAHQFCGCGAEGHPLDS | AQWAPGPAPGLR | No | Alternative | Junction | 12 | 3 | CTG | TAG | NA | No |
chr7|100868494|100868866|+|1|circRNA|TRIP6|ENST00000200457.8|4 | circTRIP6(4) | TRIP6 | LGPSRAPTFLSQAEVKSGGLAIGARESQGQGPKRKLLGSLALQEEEEEASTGPRHMSPRHLLPTARAP | ESQGQGPK | No | Alternative | Junction | 8 | 2 | CTG | TGA | TransCirc | No |
chr7|100893164|100894255|-|1|circRNA|ACHE|ENST00000411582.1|2 | circACHE(2) | ACHE | LGRAREPPRWACTCCPRPAGACSTGPCCRAVPPMDPGPRWAWERPVAGPRSWPTLWAVLQAALVGMTQSW | AVPPMDPGPR | No | Alternative | Alternative | 10 | 1 | TTG | TAG | NA | No |
chr7|102395976|102399648|+|3|circRNA|PRKRIP1|ENST00000496391.5|5,6,7 | circPRKRIP1(5,6,7) | PRKRIP1 | LGPAVESSTCTDICAGENISDRTTWMPWLRRRLSEMEEGAPDPRKCPDKAGRRGEPTGRRCREHQRGCSVARRRPRGLERSARARLLRHGGPPPLQGREHLAALICCSGTGNETPQL | LSEMEEGAPDPR | No | Alternative | Junction | 12 | 1 | CTG | TGA | TransCirc | No |
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