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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|42592150|42594304|+|2|circRNA|UBR2|NM_001184801|3,4 | circUBR2(3,4) | UBR2 | MTTSGGGGFCDCGDTEAWKEGPYCQKHELNTSEIEEEERLCS | EGPYCQKHELNTSEIEEEER | No | Junction | Junction | 20 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr6|42592150|42594304|+|2|circRNA|UBR2|NM_001184801|3,4 | circUBR2(3,4) | UBR2 | MTTSGGGGFCDCGDTEAWKEGPYCQKHELNTSEIEEEERLCS | HELNTSEIEEEER | No | Junction | Junction | 13 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr6|42592150|42594304|+|2|circRNA|UBR2|NM_001184801|3,4 | circUBR2(3,4) | UBR2 | MTTSGGGGFCDCGDTEAWKEGPYCQKHELNTSEIEEEERLCS | HELNTSEIEEEERLCS | No | Junction | Junction | 16 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr6|42612170|42617507|+|4|circRNA|UBR2|NM_001184801|8,9,10,11 | circUBR2(8,9,10,11).A | UBR2 | MTTTESFQSQTSRFRYSRFLHLEIPVDRQSHSKFKLCIRLLSHIRILV | QSHSKFK | No | Alternative | Junction | 7 | 2 | ATG | TGA | NA | No |
chr6|42632551|42637194|+|4|circRNA|UBR2|NM_015255|12,13,14,15 | circUBR2(12,13,14,15) | UBR2 | LMQCHGGYTDGEQPITLSICGHSVETIRYCVSQEKVSIHLPVSRLLAGSNAHHRRKLNEHYH | LLAGSNAHHRR | No | Junction | Junction | 11 | 1 | CTG | TAA | TransCirc | No |
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