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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|35455746|35456353|+|1|circRNA|FANCE|ENST00000229769.2|2 | circFANCE(2) | FANCE | LLLRLPRICQRNLMSLLMAVRPSLPESGLLSVLQIAQQDLAPDPDAWLRALGELLRRDLGVGTSMEGASPLSERCQRQLQSLCRGLGLGGRRLKSPQAPDPEEEENRDSQQPGKRRKDSEEEAASPEGKRVPKRLRCWEEEEDHEKERPEHKSLESLADGGSASPIKDQPVMAVKTGEDGSNLDDAKGLAESLELPKAIQETTVAAIAPDMPEEPDVPADGRSAIAAGKWAPLCAADCPAGPSP | AIQETTVAAIAPDMPEEPDVPADGRSAIAAGK | No | Junction | Junction | 32 | 2 | CTG | TGA | TransCirc | No |
chr6|35597247|35637158|-|4|circRNA|FKBP5|ENST00000539068.5|6,5,4,3 | circFKBP5(6,5,4,3) | FKBP5 | LTAEMWHSLWAKEKTTTFQLELTKLWRKCSGKNNVFYILDQDCQKSGEW | CSGKNNVFYILDQDCQK | No | Junction | Junction | 17 | 1 | TTG | TGA | TransCirc | No |
chr6|35597247|35637158|-|4|circRNA|FKBP5|ENST00000539068.5|6,5,4,3 | circFKBP5(6,5,4,3) | FKBP5 | LTAEMWHSLWAKEKTTTFQLELTKLWRKCSGKNNVFYILDQDCQKSGEW | NNVFYILDQDCQK | No | Junction | Junction | 13 | 1 | TTG | TGA | TransCirc | No |
chr6|36131270|36139055|+|10|circRNA|MAPK13|ENST00000211287.8|2,3,4,5,6,7,8,9,10,11 | circMAPK13(2,3,4,5,6,7,8,9,10,11) | MAPK13 | MNGSLGHRQAVRGEGGHQEAEPTLSVRDLRQARLPGAAAAEAHAA | LPGAAAAEAHAA | No | Alternative | Junction | 12 | 1 | ATG | TGA | TransCirc | No |
chr6|36213879|36214386|+|1|circRNA|BRPF3|ENST00000357641.10|8 | circBRPF3(8) | BRPF3 | MSLCNACSVTMASTDYPSWPLTPRPVPHLVVWVAAHQSSSRRPRMGLSYREAQTGSWRMARTMVWQALLPLQPASRKSATPGSGQGAGAVVRAKGRGPPSRRKRQMTPNCLLRQPWSPLGLHLPCLSKNPPRSPLL | SATPGSGQGAGAVVRAK | No | Alternative | Junction | 17 | 1 | ATG | TGA | TransCirc | No |
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