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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|37133129|37216695|-|4|circRNA|ELMO1|NM_001206482|14,13,12,11 | circELMO1(14,13,12,11) | ELMO1 | MSTLPWTSRRLHLGCWLWTTCCTLPSTTKMPTSGRWRIFWLRSNCVPSF | LHLGCWLWTTCCTLPSTTK | No | Alternative | Junction | 19 | 2 | ATG | TAA | TransCirc | No |
chr7|37211385|37259350|-|8|circRNA|ELMO1|NM_001206482|13,12,11,10,9,8,7,6 | circELMO1(13,12,11,10,9,8,7,6) | ELMO1 | LNFEELLLMLSLNLTTAVAAWRNASPCTREIIRSLGSLLRTPSSSMNESSPRVWMPSWKP | SLGSLLR | No | Alternative | Junction | 7 | 2 | TTG | TGA | TransCirc | No |
chr7|38207446|38219660|+|6|circRNA|STARD3NL|NM_032016|2,3,4,5,6,7 | circSTARD3NL(2,3,4,5,6,7) | STARD3NL | LIVQDASERAALIPGGLSDGQFYSPPESEAGVFSLGMVRLEKGSCNPPPG | AALIPGGLSDGQFYSPPESEAGVFSLGMVR | No | Junction | Junction | 30 | 3 | CTG | TGA | TransCirc | No |
chr7|39034491|39037258|+|1|ciRNA|POU6F2|ENST00000451021.5|1 | ciPOU6F2(1) | POU6F2 | LSFRQSMRFFYLKWTLLGVNLELQMRVGSAFQVKSRLHYK | VGSAFQVK | No | Alternative | Alternative | 8 | 2 | CTG | TAG | NA | No |
chr7|41972336|42048696|-|9|circRNA|GLI3|ENST00000395925.7|13,12,11,10,9,8,7,6,5 | circGLI3(13,12,11,10,9,8,7,6,5) | GLI3 | MPPGENRQGREANGLPPYLVALRIRTCPSLGSPHTGTPLLLPSLPSALHIPTLIPTWTISAPCTAAHRSP | MPPGENR | No | Alternative | Junction | 7 | 3 | ATG | TGA | TransCirc | No |
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