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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|80678926|80792844|+|12|circRNA|MSH3|ENST00000265081.6|8,9,10,11,12,13,14,15,16,17,18,19 | circMSH3(8,9,10,11,12,13,14,15,16,17,18,19) | MSH3 | LMCCWENRINMSQIIQIYQECSLPQARLCLIVSRTLLLVQS | INMSQIIQIYQECSLPQARLCLIVSR | No | Junction | Junction | 26 | 3 | TTG | TAG | TransCirc | No |
chr5|81092800|81212563|+|14|circRNA|RASGRF2|ENST00000265080.8|10,11,12,13,14,15,16,17,18,19,20,21,22,23 | circRASGRF2(10,11,12,13,14,15,16,17,18,19,20,21,22,23) | RASGRF2 | MGGSGGHLPMPAQLQRRAGDHLGLKQKCHLQAEENLGQGL | AGDHLGLK | No | Alternative | Alternative | 8 | 3 | ATG | TAA | TransCirc | No |
chr5|82310156|82312851|+|2|circRNA|ATP6AP1L|NM_001017971|8,9 | circATP6AP1L(8,9) | ATP6AP1L | LSIQSWFSLRRVEIISNNSIQAVFNPTGVYAPSGYSYRCQRVGSLQQDQALLLPSDTDDGSSLWEVTFIDFQVVFEAW | RVEIISNNSIQAVFNPTGVYAPSGYSYR | No | Alternative | Junction | 28 | 2 | TTG | TGA | TransCirc | No |
chr5|83519348|83542268|+|2|circRNA|VCAN|ENST00000265077.7|7,8 | circVCAN(7,8) | VCAN | MGSISLPLCPRTQKLQKLGVASLKVLHLLRISRTALKVILIHL | LGVASLK | No | Alternative | Alternative | 7 | 1 | ATG | TAA | TransCirc | No |
chr5|865413|884070|-|8|circRNA|BRD9|NM_001009877|15,14,13,12,11,10,9,8 | circBRD9(15,14,13,12,11,10,9,8) | BRD9 | MRRRSSCRTCTKHRRSAAALGRRPTSAPCPTPPRGTSTTWLHV | RSAAALGR | No | Alternative | Junction | 8 | 1 | ATG | TGA | NA | No |
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