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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|228184|233645|+|3|circRNA|SDHA|NM_001294332|5,6,7 | circSDHA(5,6,7) | SDHA | MVLVVSLRKDVVEREAFSLTVKAKGLWSDTPLSRRTWRLEMWCLGP | AKGLWSDTPLSR | No | Alternative | Alternative | 12 | 1 | ATG | TGA | TransCirc | No |
chr5|228184|233645|+|3|circRNA|SDHA|NM_001294332|5,6,7 | circSDHA(5,6,7) | SDHA | MVLVVSLRKDVVEREAFSLTVKAKGLWSDTPLSRRTWRLEMWCLGP | GLWSDTPLSR | No | Alternative | Alternative | 10 | 1 | ATG | TGA | TransCirc | No |
chr5|233476|251468|+|6|circRNA|SDHA|NM_001294332|7,8,9,10,11,12 | circSDHA(7,8,9,10,11,12) | SDHA | MVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKAYMVLVVSLRKDVVEREAFSLTVKAKGLWSDTPLSRRTWRLEMWCLGP | AYMVLVVSLRK | No | Alternative | Junction | 11 | 3 | ATG | TGA | TransCirc | No |
chr5|233476|251468|+|6|circRNA|SDHA|NM_001294332|7,8,9,10,11,12 | circSDHA(7,8,9,10,11,12) | SDHA | MVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKAYMVLVVSLRKDVVEREAFSLTVKAKGLWSDTPLSRRTWRLEMWCLGP | EDYKAYMVLVVSLR | No | Junction | Junction | 14 | 3 | ATG | TGA | TransCirc | No |
chr5|251043|251423|+|1|ciRNA|SDHA|ENST00000509082.1|2 | ciSDHA(2) | SDHA | LDGSWPTAIKPQPVTPWTSRPRLTARRAHVTGSRLPLMELFVSPGMVWNTDLVETLELQNLMLCALQTIYGAEVVGKSASSMET | AHVTGSR | No | Alternative | Junction | 7 | 3 | CTG | TAA | NA | No |
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