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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|94208345|94270818|+|10|circRNA|SMARCAD1|NM_001128430|2,3,4,5,6,7,8,9,10,11 | circSMARCAD1(2,3,4,5,6,7,8,9,10,11) | SMARCAD1 | LSLKPYQKVGLNWLALVHKHGLNGILADEMIVHLKPPSLQGGAFYQYESFQPGPFSL | HGLNGILADEMIVHLKPPSLQGGAFYQYESFQPGPFSL | No | Junction | Junction | 38 | 2 | TTG | TGA | NA | No |
chr4|94226118|94237018|+|3|circRNA|SMARCAD1|NM_001128430|3,4,5 | circSMARCAD1(3,4,5) | SMARCAD1 | LVMQKILVFQKLQIMKEKQVYHISKIKEEYSILICLLIVKMSFPQIAPIQFKRKHSTKIQ | MSFPQIAPIQFK | No | Alternative | Junction | 12 | 2 | TTG | TGA | TransCirc | No |
chr4|94585564|94664035|+|8|circRNA|PDLIM5|NM_001256427|7,8,9,10,11,12,13,14 | circPDLIM5(7,8,9,10,11,12,13,14) | PDLIM5 | LEGQTFFSKKDKPLSHQENTLWSAIQSFIMYPLTVMPARRD | DKPLSHQENTLWSAIQSFIMYPLTVMPARR | No | Junction | Junction | 30 | 1 | TTG | TGA | TransCirc | No |
chr4|94640275|94657547|+|3|circRNA|PDLIM5|ENST00000437932.5|8,9,10 | circPDLIM5(8,9,10) | PDLIM5 | MFFTWRMVNPTVRLYLPLEESQTALLTQDQWHQPTQLWDKPSQVTRTL | MVNPTVR | No | Alternative | Junction | 7 | 2 | ATG | TAG | TransCirc | No |
chr4|947708|955890|+|9|circRNA|TMEM175|NM_001297423|2,3,4,5,6,7,8,9,10 | circTMEM175(2,3,4,5,6,7,8,9,10) | TMEM175 | LAPVTARQRPRHVPAPDPRAGTGYTGGLPPRQERRGRWGGDPVLPTHAQLQ | AGTGYTGGLPPRQER | No | Alternative | Junction | 15 | 2 | CTG | TGA | TransCirc | No |
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