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Circular RNA Associated Neoantigens (CRANS)
Use criteria below to search among 914 CRANS:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Neoantigen | Kmer Length | CircRNA Input Peptide | Gene | Oncogenic Driver | Passing Algorithms | No. of Passing Algorithms | Best Combined HLA Alleles |
|---|---|---|---|---|---|---|---|---|---|
chr22|50529270|50529466|1|196|0 | circTYMP(S1L) | VAAHSGGAPW | 10 | VAAHSGGAPWGR | TYMP | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC | 8 | HLA-B*58:01 |
chr22|50529270|50529466|1|196|0 | circTYMP(S1L) | SPQRWGTL | 8 | EGGSPQRWGTLGPVLVVGHR | TYMP | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM | 7 | HLA-B*07:02 |
chr3|101685817|101685928|1|111|0 | circRPL24(1L) | NASRLSFPR | 9 | NASRLSFPR | RPL24 | No | MHCflurry,NetMHCcons,NetMHCpan,PickPocket | 4 | HLA-A*33:03 |
chr3|114351769|114351949|1|180|0 | NA | AQPWPLLGV | 9 | AAQPWPLLGVR | ZBTB20 | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC | 8 | HLA-A*02:06 |
chr3|119843254|119876508|2|99,73|0,33181 | circGSK3B(L1,NE) | ASGPGNSNK | 9 | IQAAASTPTNATAASGPGNSNKGANQR | GSK3B | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,SMM,SMMPMBEC | 7 | HLA-A*11:01 |
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