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Circular RNA Associated Neoantigens (CRANS)
Use criteria below to search among 914 CRANS:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Neoantigen | Kmer Length | CircRNA Input Peptide | Gene | Oncogenic Driver | Passing Algorithms | No. of Passing Algorithms | Best Combined HLA Alleles |
|---|---|---|---|---|---|---|---|---|---|
chr9|33948373|33953474|2|112,171|0,4930 | circUBAP2(NE,NE) | IRWHQGLAA | 9 | NTTIRWHQGLAAPLPSTPVYHHPK | UBAP2 | No | HLAthena | 1 | HLA-B*39:06 |
chr9|89328659|89334730|2|148,84|0,5987 | circSECISBP2(NE,S3) | QTGNPESLQK | 10 | MVTISEQTGNPESLQK | SECISBP2 | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC | 8 | HLA-A*11:01 |
chr9|89328659|89334730|2|148,84|0,5987 | circSECISBP2(NE,S3) | LSLNLPHW | 8 | MYLPPNLSLNLPHWTFLNCK | SECISBP2 | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,HLAthena | 7 | HLA-B*58:01,HLA-B*57:01 |
chr9|89328659|89334730|2|148,84|0,5987 | circSECISBP2(NE,S3) | MYLPPNLSLNL | 11 | MYLPPNLSLNLPHWTFLNCK | SECISBP2 | No | HLAthena | 1 | HLA-A*24:02 |
chr9|89328659|89334730|2|263,95|0,5976 | circSECISBP2(NE,S3).A | LSTLSLPTF | 9 | SNPSGDLSTLSLPTFLF | SECISBP2 | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC | 8 | HLA-B*15:03 |
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