top of page
Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|53803927|53806517|2|75,160|0,2430 | circNDC1(S9,10L).A | NDC1 | LHIFTQFSLTLFNTLNIYLAGPDVAFSIFSFTKTRSFQPQPTRLMCFLFNHHLQKGQMSAFQKC | LMCFLFNHHLQK | No | Alternative | Junction | 12 | 3 | TTG | TAA | NA | Yes |
chr1|6099746|6099988|1|242|0 | NA | KCNAB2 | LGQAGQRGERAGQARVTPPCSLGRRARDASKSAGAGCHLQAQACVPSSTQALQTTRGRAPLREPLPGKTGRAG | EPLPGKTGR | No | Alternative | Junction | 9 | 3 | CTG | TAG | NA | No |
chr1|64009304|64050716|4|72,66,336,31|0,14093,40386,41381 | circROR1(NE,NE,2L,3) | ROR1 | LGIHLPPSAGSKMMLLWSRSPGGSPFGPPSMALGCGLETSTPQTQATSSAWQQTARRWFLPLESCLSSLVSRPLLGMDFGPQPNVAPLPLQVQDTQTELSVSAELVPTSSWNISSELNKGPVEAGD | MMLLWSR | No | Alternative | Junction | 7 | 1 | CTG | TAA | TransCirc | No |
chr1|66372436|66372706|1|270|0 | NA | PDE4B | LQQKTSPPWIHNPPLPVEMNILKVPHHHWTSRTGTARV | VPHHHWTSRTGTAR | No | Alternative | Junction | 14 | 1 | TTG | TGA | NA | Yes |
chr1|78277616|78277786|1|170|0 | circT013643(NE) | T013643 | LPKQELRACMYKSDILSHWPGRVSQKGLACASLQTRQTEPNIQAHLQTKAGTNASEHCPNKS | AGTNASEHCPNK | No | Alternative | Junction | 12 | 1 | CTG | TGA | NA | Yes |
Page 1 of 1
bottom of page