top of page
Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|80199224|80203832|2|78,129|0,4479 | circGNAI1(NE,S1) | GNAI1 | LQNLLELYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMMHANSLC | LQNLLELYYLNDLDR | No | Alternative | Junction | 15 | 2 | CTG | TAG | TransCirc | Yes |
chr7|8386686|8386977|1|291|0 | circSLC30A7(S1S) | SLC30A7 | LECCLKYIFNKLSCFEFFEPLKTHLHCLNRAVRLFTIILALMSVVAFERIKYNRPTS | THLHCLNRAVR | No | Alternative | Junction | 11 | 1 | CTG | TAG | NA | Yes |
chr7|99374733|99386789|3|48,77,105|0,10968,11951 | circARPC1B(NE,3,4) | ARPC1B | MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTAGSARRLPRVRGRGAGGAKPPWPTTASWWSPSAATPGTRTAPRLPSAPTTMRCISMKRAVPNGPRCTSSRSTTGR | AVPNGPR | Yes | Alternative | Junction | 7 | 2 | ATG | TGA | NA | No |
chr7|99374733|99386789|3|48,77,105|0,10968,11951 | circARPC1B(NE,3,4) | ARPC1B | MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTAGSARRLPRVRGRGAGGAKPPWPTTASWWSPSAATPGTRTAPRLPSAPTTMRCISMKRAVPNGPRCTSSRSTTGR | RAVPNGPR | Yes | Alternative | Junction | 8 | 2 | ATG | TGA | NA | No |
chr7|99493039|99494631|2|8,174|0,1418 | circZNF394(NE,NE) | ZNF394 | LESRVENKELIPMQQILEEAEPQGQLQEAFQGKRPLFSKCGSTHEDRVEKQSGDPLPRCQVWKAEWRTKS | VEKQSGDPLPR | No | Alternative | Junction | 11 | 3 | TTG | TGA | NA | No |
Page 1 of 1
bottom of page