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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|55490325|55490479|1|154|0 | circT324473(NE).A | T324473 | MGPERSAHRDAFSSQNPGMPGFKRIMQLQAQSQHLTDGAGLGGVWGCAEQRDGTRKECT | DAFSSQNPGMPGFK | No | Alternative | Junction | 14 | 3 | ATG | TAG | NA | No |
chr7|66797373|66805396|2|133,69|0,7954 | circRABGEF1(1,S3) | RABGEF1 | MYSVQKLLMMRRKILPFKRESVYHALLQSKPTDDWRGWLLFHQSVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRISISRASAIQAD | LQSKPTDDWR | Yes | Alternative | Junction | 10 | 1 | ATG | TGA | TransCirc | No |
chr7|66797373|66805396|2|43,180|0,7843 | circRABGEF1(1S,S3).A | RABGEF1 | LQSKPTDDWRGWLLFHQSVPPERVEKIMDQIEKMPSRSPRMSRRQRMTSSPPSSTLF | IMDQIEKMPSR | Yes | Alternative | Junction | 11 | 1 | CTG | TGA | TransCirc | Yes |
chr7|66797373|66805396|2|43,180|0,7843 | circRABGEF1(1S,S3).A | RABGEF1 | LQSKPTDDWRGWLLFHQSVPPERVEKIMDQIEKMPSRSPRMSRRQRMTSSPPSSTLF | MTSSPPSSTLF | Yes | Alternative | Junction | 11 | 1 | CTG | TGA | TransCirc | Yes |
chr7|677228|711527|3|92,105,24|0,3327,34275 | circPRKAR1B(NE,NE,3S) | PRKAR1B | LRWPRPSPRTCSSLTWMTTRGGRKQPPSPCVAHPPEPCGEGPPPARRRECRGVHRGGRRVLRQEGDSQGLQNHDCAGQGHLQERALRSPG | TCSSLTWMTTRGGR | Yes | Alternative | Junction | 14 | 2 | CTG | TGA | TransCirc | Yes |
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