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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|139359842|139360192|1|350|0 | circLUC7L2(L1S) | LUC7L2 | LAGGGVEGESLLGPCRFCPKNRTESEGTRVAVGGCRLPRTRRREERSPDSSRNPSGSLSARLEAAAATETAAHLPPSLPASWWSPRGKRLSARSVRAPVVATVAASGVRA | LAGGGVEGESLLGPCRFCPK | No | Alternative | Junction | 20 | 3 | CTG | TGA | NA | Yes |
chr7|139359842|139360192|1|350|0 | circLUC7L2(L1S) | LUC7L2 | LAGGGVEGESLLGPCRFCPKNRTESEGTRVAVGGCRLPRTRRREERSPDSSRNPSGSLSARLEAAAATETAAHLPPSLPASWWSPRGKRLSARSVRAPVVATVAASGVRA | NPSGSLSAR | No | Alternative | Junction | 9 | 3 | CTG | TGA | NA | No |
chr7|139359842|139360192|1|350|0 | circLUC7L2(L1S) | LUC7L2 | LAGGGVEGESLLGPCRFCPKNRTESEGTRVAVGGCRLPRTRRREERSPDSSRNPSGSLSARLEAAAATETAAHLPPSLPASWWSPRGKRLSARSVRAPVVATVAASGVRA | VAVGGCRLPR | No | Alternative | Junction | 10 | 3 | CTG | TGA | NA | Yes |
chr7|139359842|139360192|1|350|0 | circLUC7L2(L1S) | LUC7L2 | LKARACLARVASVPRTGRRVRARGSLSGAVVFHVHVVVRSAVRTLPATPPAPFPHASRRRRPPRQQRTFPHPFPPVGGAPAGND | ACLARVASVPR | No | Alternative | Junction | 11 | 1 | TTG | TGA | NA | Yes |
chr7|139583823|139596745|2|268,91|0,12831 | NA | HIPK2 | LHFQHCLQAKKKRHQLCHSPRLPLLRLLQQHQPLLRAAACWAQQCQCL | RHQLCHSPR | No | Alternative | Alternative | 9 | 1 | TTG | TGA | TransCirc | No |
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