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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|179800053|179800259|2|15,76|0,130 | circMGAT4B(S1S,S2L) | MGAT4B | MMYAQSKGIYYVQLEDDIVEDQTEPRLLLPHDVRAVQRHLLRAAGG | AVQRHLLR | No | Alternative | Junction | 8 | 2 | ATG | TGA | TransCirc | No |
chr5|181232707|181232907|1|200|0 | circTRIM41(NE) | TRIM41 | LKSRQGWNGVSERCMKPSWGVREPRLVALQNRPPSSAACWQRPRSGASRGVSGCSR | SGASRGVSGCSR | No | Alternative | Alternative | 12 | 1 | CTG | TGA | TransCirc | Yes |
chr5|31421271|31424471|3|106,158,45|0,1515,3155 | circDROSHA(NE,S1S,2S) | DROSHA | LTCAKSGSIILSTHSNYKSQILIDNLLKLLQFYKNLLSLKKQLE | LLQFYKNLLSLK | No | Alternative | Junction | 12 | 2 | CTG | TAA | TransCirc | Yes |
chr5|31421271|31424471|3|106,158,45|0,1515,3155 | circDROSHA(NE,S1S,2S) | DROSHA | LTCAKSGSIILSTHSNYKSQILIDNLLKLLQFYKNLLSLKKQLE | LTCAKSGSIILSTHSNYK | No | Junction | Junction | 18 | 2 | CTG | TAA | TransCirc | Yes |
chr5|31421271|31424471|3|106,158,45|0,1515,3155 | circDROSHA(NE,S1S,2S) | DROSHA | LTCAKSGSIILSTHSNYKSQILIDNLLKLLQFYKNLLSLKKQLE | SGSIILSTHSNYKSQILIDNLLK | No | Alternative | Junction | 23 | 2 | CTG | TAA | TransCirc | Yes |
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