top of page
Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|47661293|47678311|2|121,33|0,16985 | circSMARCC1(NE,NE) | SMARCC1 | LAYRNFMIDTLKLMSRKYKKQHEPLGKWIPPTVWRAAALQAQGPMSQRSLILGISKFYD | WIPPTVWR | Yes | Alternative | Junction | 8 | 2 | TTG | TGA | TransCirc | No |
chr3|47867245|47877523|2|67,107|0,10171 | circMAP4(S1S,NE) | MAP4 | MTSPPHRTRSSHQAQRRKQSYSHIQSKCGSKDNIKHVPGGGNE | SSHQAQR | Yes | Alternative | Junction | 7 | 1 | ATG | TAG | NA | No |
chr3|48469544|48473129|3|29,116,120|0,183,3465 | circSHISA5(NE,NE,S2S) | SHISA5 | LCCLSSLSSSASPAPAAAFTRRAADHVRLSPPPHPPLRFAFFFSKRGGN | LSPPPHPPLR | No | Alternative | Junction | 10 | 3 | TTG | TGA | TransCirc | Yes |
chr3|49016275|49016648|3|65,83,37|0,153,336 | circDALRD3(NE,L1S,S2S) | DALRD3 | LTAVSPRRAQRVAPLSCLSTEAWWGSGTRPSLDRDLWCSLCGHHQV | LTAVSPRR | No | Alternative | Junction | 8 | 2 | CTG | TGA | TransCirc | No |
chr3|50054334|50059746|3|61,40,77|0,3393,5335 | circRBM6(NE,L1,NE) | RBM6 | LFILQEPKRSDRGQARINNLPSAILQNLDPPFSIDGKMVAVNLATGKRSVRQTLVGTDLPVHSARTQEK | SDRGQAR | No | Alternative | Junction | 7 | 3 | CTG | TGA | NA | No |
Page 1 of 1
bottom of page