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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr20|45883711|45883974|1|263|0 | circZSWIM1(S2S) | ZSWIM1 | LPPHPSHAQCPPPGAPARHAAGSVDGRLCYQSRQHPGQQVE | HAAGSVDGR | No | Alternative | Alternative | 9 | 2 | CTG | TGA | TransCirc | Yes |
chr20|48953555|48963898|2|143,69|0,10274 | NA | ARFGEF2 | LEDVVTSAIKVAGGQRTGKTNPVKTPVPCDPSCSSIPKVRSFEAQSGTKQTNNSRKNRGLMTEPRRW | GLMTEPR | Yes | Alternative | Junction | 7 | 2 | TTG | TGA | TransCirc | No |
chr20|48953555|48963898|2|143,69|0,10274 | NA | ARFGEF2 | LEDVVTSAIKVAGGQRTGKTNPVKTPVPCDPSCSSIPKVRSFEAQSGTKQTNNSRKNRGLMTEPRRW | GLMTEPRR | Yes | Alternative | Junction | 8 | 2 | TTG | TGA | TransCirc | No |
chr20|49636020|49636275|1|255|0 | circB4GALT5(NE).D | B4GALT5 | LAFCFHKTDVCPAALSPSPTPHPRKQSDEIFFWRGEGLHSKRTEILCLMKDHRVQGENVTAHAQTPSLDQPLELRE | GEGLHSK | No | Alternative | Junction | 7 | 3 | CTG | TGA | NA | No |
chr20|51432776|51433017|1|241|0 | circT219960(NE) | T219960 | MAVSHGCARRIRGWCLRTWPWESIRVGQTAGPCHLSALGKRLPMQLS | VGQTAGPCHLSALGK | No | Alternative | Alternative | 15 | 1 | ATG | TAG | NA | No |
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