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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr20|31664767|31665000|1|233|0 | circBCL2L1(NE).A | BCL2L1 | LPGQADLCPMPVQPGQPGCQGQSGLARSSSGLPLSSAPPLACLIPRGPSHPGLSAQAGRAGRRACCMGWGRAD | GPSHPGLSAQAGR | No | Junction | Junction | 13 | 2 | CTG | TAG | NA | Yes |
chr20|31665502|31665762|1|260|0 | circBCL2L1(NE).D | BCL2L1 | LVQPLPLSLPENVFLPGSLKVFRTSSPERRLDCLCFDVCGLRIDHFPPTPHLSSLGLRIHKISTKSVQRRLAGMEGFVAGGRRALPDWCNPYPLASLKMFFCQGA | LAGMEGFVAGGR | No | Alternative | Junction | 12 | 2 | TTG | TGA | NA | No |
chr20|31721699|31721897|1|198|0 | NA | BCL2L1 | LGSHCGLFLLRRGTVRGKRRQGDAGIGESDRSLDGHLPDIPAPHHPRDSISEL | QGDAGIGESDR | No | Alternative | Junction | 11 | 3 | CTG | TGA | TransCirc | No |
chr20|31742540|31766682|3|107,101,34|0,14866,24108 | circTPX2(2,3S,S5) | TPX2 | LLRKVVQILGKTCSSALSGRQCHKLKALIPMPYQEKLQPSLRGS | TCSSALSGR | No | Alternative | Junction | 9 | 2 | CTG | TGA | TransCirc | No |
chr20|34921005|34921139|1|134|0 | circACSS2(S1) | ACSS2 | LWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTNLRGFPHIRT | LLMKFGDEPVTNLR | No | Junction | Junction | 14 | 1 | CTG | TGA | TransCirc | Yes |
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