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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|205788361|205788654|1|293|0 | NA | XM_017005188 | LIEMLSNMAPDLLSFGLHSFVSGSSRNSKRSPSFATNLPPCIYLCESQTSAFPISNTHPFPSCCRSAQ | RSPSFATNLPPCIYLCESQTSAFPISNTHPFPSCCR | No | Alternative | Alternative | 36 | 2 | TTG | TGA | NA | Yes |
chr2|216141185|216162048|4|134,194,94,70|0,6897,18882,20793 | NA | XRCC5 | MRRQTPLKTCFQPPKSQILDFRDYFSVCCTELYIPGSLYPQFSSIFGIC | QTPLKTCFQPPK | No | Alternative | Junction | 12 | 1 | ATG | TGA | riboCIRC | Yes |
chr2|240013578|240014860|2|72,122|0,1160 | circNDUFA10(NE,NE) | NDUFA10 | MCPFQRSRGGFRRKEIRNSEMSMYAFLLPLWNFYCLSICLCGPLQRGEERHHLRLPAPPPGDLHRCARSRGPEADSEERRLETARCLCMPFYCHSGTFIV | HHLRLPAPPPGDLHR | No | Alternative | Junction | 15 | 1 | ATG | TAA | NA | Yes |
chr2|240463346|240465210|4|166,131,120,134|0,1269,1509,1730 | circGPC1(L1,2,S3,4) | GPC1 | LPKCAQGLPCQPGRPGRRVEEPPGLHGAHHRQVLGYIGCGECHRQRAHVAGGGHQRPPGQQGHAHGQGHPGLREPQGQPPGPRA | RVEEPPGLHGAHHR | No | Alternative | Junction | 14 | 2 | TTG | TGA | TransCirc | No |
chr2|240463346|240465210|4|166,131,120,134|0,1269,1509,1730 | circGPC1(L1,2,S3,4) | GPC1 | LPKCAQGLPCQPGRPGRRVEEPPGLHGAHHRQVLGYIGCGECHRQRAHVAGGGHQRPPGQQGHAHGQGHPGLREPQGQPPGPRA | VEEPPGLHGAHHR | No | Alternative | Junction | 13 | 2 | TTG | TGA | TransCirc | No |
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