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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|119264441|119264800|1|359|0 | NA | STEAP3 | MLLPQSTRGKSTAGATGRLSSSHRPSLLLPTDSSLLPL | STAGATGR | No | Alternative | Alternative | 8 | 1 | ATG | TGA | TransCirc | No |
chr2|128183674|128187614|2|30,153|0,3787 | circUGGT1(NE,S2).A | UGGT1 | LTKEPKLEAAVRIVPEWQDYDQEIKQLQIRFQKEKETGALYKEKTKEPSREVHYMLWI | EPSREVHYMLWI | Yes | Junction | Junction | 12 | 3 | TTG | TGA | riboCIRC,TransCirc | Yes |
chr2|131055271|131055695|2|64,82|0,342 | NA | FAM168B | LGPPWPCQQVTLLAHLTKCPVPPPAGLCHRTPPPRTPS | CPVPPPAGLCHRTPPPR | No | Alternative | Junction | 17 | 3 | CTG | TAG | TransCirc | Yes |
chr2|14649315|14666145|3|179,122,89|0,15153,16741 | circENST00000497769(1,NE,2S) | ENST00000497769 | LDLCLMDALRRPTNHQLLVLQLDPLDLGECTLFSNHILPPVAR | LDLCLMDALR | No | Alternative | Alternative | 10 | 2 | TTG | TAA | NA | Yes |
chr2|158115219|158115376|1|157|0 | circUPP2(NE) | UPP2 | MYKTGPVLAISVSIHGCISASHCRLEKKVGTFTCRSSFSLQLRILTQSNKILYVQNRACARHQCKYPWLHFS | VGTFTCR | No | Alternative | Junction | 7 | 2 | ATG | TAG | NA | No |
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