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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|158003567|158010720|2|8,334|0,6819 | circNM_018240(NE,NE) | NM_018240 | LRMSQPALEGGDLDQRCGCLCMHVDKSFSPKKHALALP | LRMSQPALEGGDLDQR | No | Alternative | Alternative | 16 | 3 | CTG | TGA | NA | Yes |
chr1|158003567|158010720|2|8,334|0,6819 | circNM_018240(NE,NE) | NM_018240 | LRMSQPALEGGDLDQRCGCLCMHVDKSFSPKKHALALP | MSQPALEGGDLDQR | No | Alternative | Alternative | 14 | 3 | CTG | TGA | NA | Yes |
chr1|159923280|159923533|1|253|0 | circTAGLN2(L1S) | TAGLN2 | LSSQLNTLAKNPEVLPAPTHVRLFFGFGFGEVSFQPRVWVGPSALRGPSPFPAYCNSRVRVRVVLTAAVALGFRLLPASPSPSPFVFPIKHPSQEP | GPSPFPAYCNSR | No | Alternative | Junction | 12 | 3 | TTG | TGA | NA | Yes |
chr1|160213715|160213915|1|200|0 | circPEA15(S4L).A | PEA15 | MGEVGGSREKQGLSFPTLGGGGGYFYANRNQHIPPTSLSSTPPISLKCGSRKDLHFPTLRS | DLHFPTLR | No | Alternative | Junction | 8 | 1 | ATG | TGA | TransCirc | No |
chr1|17580552|17588479|3|80,186,34|0,6907,7893 | circARHGEF10L(1,2,3) | ARHGEF10L | LRQRTTQERRLSLMTVMMKRTPAQPWASPALLLRGTQTPH | TPAQPWASPALLLR | Yes | Alternative | Alternative | 14 | 3 | CTG | TGA | TransCirc | Yes |
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