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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|76085358|76085539|1|181|0 | circEXOC7(NE) | EXOC7 | LPQPLGLRSQSCPPLLCPLPRPRSELIQLVAVTQKTAERSRKVGCHRACGVWGAMGGPPGIAAAFGPEEPILSSSPLSPTPTQV | LPQPLGLR | No | Alternative | Junction | 8 | 3 | TTG | TGA | NA | No |
chr17|77493054|77498573|3|22,52,51|0,4260,5468 | NA | SEPTIN9 | LKTPHTVSLPTCGTFSSGRTCRTSRTSPAASTSRHQVGYHRS | TSPAASTSRHQVGYHR | No | Junction | Junction | 16 | 2 | TTG | TGA | NA | Yes |
chr17|77499980|77500255|1|275|0 | NA | SEPTIN9 | LCPAKTAPMVGVVRGPSSLGWGGSQTPSAPTSMHTHSHSYTPSR | TAPMVGVVR | No | Junction | Junction | 9 | 2 | CTG | TGA | NA | No |
chr17|77499980|77500255|1|275|0 | NA | SEPTIN9 | LGGEGVRRPVPQLPCTHTHTHTLLLADLLLAASSQPGACRCTW | LGGEGVR | No | Alternative | Alternative | 7 | 1 | TTG | TGA | NA | No |
chr17|77499980|77500255|1|275|0 | NA | SEPTIN9 | LSGVSSGPSFSPGARQVTGSRKGLWSSVPCKDSPHGGGGEGSFLSWVGRESDAQCPNFHAHTLTLIHSFSLTFSWLQAASPVPADAPGDVCT | KGLWSSVPCK | No | Alternative | Junction | 10 | 1 | CTG | TGA | NA | Yes |
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