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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|20204332|20205912|2|144,68|0,1512 | circSPECC1(NE,S1).A | SPECC1 | LSQERGLCHVVPPTPGNQCPVQLLPTLPLMSSDKNY | GLCHVVPPTPGNQCPVQLLPTLPLMSSDK | No | Alternative | Junction | 29 | 1 | CTG | TAA | TransCirc | Yes |
chr17|20204332|20205912|2|144,68|0,1512 | circSPECC1(NE,S1).A | SPECC1 | LSQERGLCHVVPPTPGNQCPVQLLPTLPLMSSDKNY | GLCHVVPPTPGNQCPVQLLPTLPLMSSDKNY | No | Alternative | Junction | 31 | 1 | CTG | TAA | TransCirc | Yes |
chr17|20204332|20205912|2|144,68|0,1512 | circSPECC1(NE,S1).A | SPECC1 | LSQERGLCHVVPPTPGNQCPVQLLPTLPLMSSDKNY | LSQERGLCHVVPPTPGNQCPVQLLPTLPLMSSDK | No | Alternative | Junction | 34 | 1 | CTG | TAA | TransCirc | Yes |
chr17|2690326|2690635|1|309|0 | NA | CLUH | LPRTLLRACRDREGARRTASQRPRHQGARLREKGASLRAEEEARPSSSTSHPTPPPCPPGSLACLPRRRCFCAGSMNR | HQGARLR | No | Alternative | Alternative | 7 | 2 | CTG | TGA | NA | No |
chr17|2690326|2690635|1|309|0 | NA | CLUH | LPRTLLRACRDREGARRTASQRPRHQGARLREKGASLRAEEEARPSSSTSHPTPPPCPPGSLACLPRRRCFCAGSMNR | LPRTLLR | No | Alternative | Alternative | 7 | 2 | CTG | TGA | NA | No |
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