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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr16|56466151|56476170|3|132,68,90|0,724,9929 | NA | OGFOD1 | MVYRDRETLKFVKHINHRSLEQKKTFPNRTDALLCHDDELEGRRIAFILYLVPPWDRSMGGTLDLYSIDGKISIKHFQPKQIVKSLIPSWNKLVFFEWSTETERL | SMGGTLDLYSIDGK | No | Alternative | Junction | 14 | 2 | ATG | TGA | TransCirc | Yes |
chr16|58559803|58560362|2|91,131|0,428 | circCNOT1(NE,S1L) | CNOT1 | MVANCSNVMNKARQPPPGVMPKGRPPSASSLASRAKQQC | QPPPGVMPKGRPPSASSLASR | No | Alternative | Junction | 21 | 2 | ATG | TAG | NA | Yes |
chr16|66938036|66939358|2|205,142|0,1180 | circCES2(NE,NE) | CES2 | LGSLVHVKGANAGVQTFLGIPFAKPPLGPLRFAPPEPPESWSGVRDGTTHPAMCLQDLTAVESEFLSQFNMTFPSDSMSEDCLYLSIYTPAHSHEGSNLPARTQPVPSGPHTRGRCWGVLSM | TQPVPSGPHTRGR | Yes | Alternative | Junction | 13 | 3 | CTG | TGA | TransCirc | No |
chr16|68685204|68685350|1|146|0 | circCDH3(NE) | CDH3 | MKSWSWPWTMLPHPERPSRVASHGPRQWAGHSCGHPRP | SWSWPWTMLPHPERPSRVASHGPR | No | Junction | Junction | 24 | 3 | ATG | TGA | TransCirc | Yes |
chr16|68801669|68808848|2|48,156|0,7023 | circCDH1(NE,2S) | CDH1 | LHRSTKDSLFFPSNPTKTKKARFSTASLAKELTHPLLVSLLLKEKQDG | FSTASLAK | No | Alternative | Junction | 8 | 2 | TTG | TGA | TransCirc | No |
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