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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|43021274|43025429|3|101,235,56|0,3474,4099 | circUBR1(L2,NE,S5S) | UBR1 | LGSSAMNIQMLLEKLKGIPQLEGQKDMITWILQAEHMQKKRRKQENKDEGKNIAATTTS | MITWILQAEHMQK | No | Junction | Junction | 13 | 3 | TTG | TGA | TransCirc | Yes |
chr15|43021274|43025429|3|101,235,56|0,3474,4099 | circUBR1(L2,NE,S5S) | UBR1 | LNICRRKGENKKTKMKVKTLPPPPPPEFCPAFSKVINLLNCDIMMYILRTVFERAIDTDSNLWTEGMLQMVCLPEIFSLHQVLEFLGS | TLPPPPPPEFCPAFSKVINLLNCDIMMYILR | No | Junction | Junction | 31 | 1 | CTG | TAG | TransCirc | Yes |
chr15|43021274|43025429|3|101,47,56|0,3662,4099 | circUBR1(L2,NE,S5S).A | UBR1 | LPCFQQRLGSSAMNIQMLLEKLKGIPQLEGQKDMITWILQAEHMQKKRRKQENKDEGKNIAATTTS | LPCFQQRLGSSAMNIQMLLEK | No | Alternative | Junction | 21 | 1 | CTG | TGA | TransCirc | Yes |
chr15|44497026|44503850|2|43,297|0,6527 | circCTDSPL2(1S,NE).A | CTDSPL2 | LKISKINKLWVSCPEIRLCYYFIKHVPPLTEEQHLLNDLPLSPSRTGAQFFEDVIELLSPNVAD | LWVSCPEIR | No | Alternative | Junction | 9 | 3 | CTG | TGA | NA | No |
chr15|50586391|50592626|4|97,65,267,335|0,3200,5519,5900 | circTRPM7(NE,NE,NE,3L) | TRPM7 | MCIQIKEVGDRVNYIKRSLQSLDSQIGHLQDLSALTVDTLKTLTAQKASEASKVHNEITRELSISKHLAQNLIDDGPVRPSVWKKHGVVNTLSSSLPQGDLESNNPFHCALFPSAVSPPELRQRLHGVELLKIFNKNQKLGSSSTSIPHLSSPPTKFFVSTPSQPSCKSHLETGTKDQETVCSKATEGDNTEFGAFVGHRDSMDLQRFKETSNKIKILSNNNTSENTLKRVSSLAGFTDCHRTSIPVHSKQEWNRCAFRLKKLEIVSTT | LEIVSTT | Yes | Alternative | Junction | 7 | 2 | ATG | TAA | TransCirc | No |
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