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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|79521501|79521748|1|247|0 | circT082905(NE) | T082905 | LLATPVCQVFHQNSSIPTIMAMAAVSLKLVGDWAERKLKILSHWMRF | LKILSHWMR | No | Alternative | Alternative | 9 | 2 | TTG | TGA | NA | No |
chr12|88532440|88564344|2|60,67|0,31837 | circKITLG(NE,2L).A | KITLG | LKRSSKDYLEMVTHSPPFANLPKDYMITLKYVPGMDVLQSSCFEKKLKGLP | DYMITLKYVPGMDVLQSSCFEK | No | Junction | Junction | 22 | 2 | TTG | TGA | NA | Yes |
chr12|88532440|88564344|2|60,67|0,31837 | circKITLG(NE,2L).A | KITLG | LKRSSKDYLEMVTHSPPFANLPKDYMITLKYVPGMDVLQSSCFEKKLKGLP | SSKDYLEMVTHSPPFANLPK | No | Alternative | Junction | 20 | 2 | TTG | TGA | NA | Yes |
chr12|88532440|88564344|2|60,67|0,31837 | circKITLG(NE,2L).A | KITLG | LKRSSKDYLEMVTHSPPFANLPKDYMITLKYVPGMDVLQSSCFEKKLKGLP | YVPGMDVLQSSCFEK | No | Junction | Junction | 15 | 2 | TTG | TGA | NA | Yes |
chr13|110634499|110634793|1|294|0 | NA | NAXD | LCRMACGWSLSSRPSSMATGRLCSLPTTWSSADCMTLW | LCRMACGWSLSSRPSSMATGR | No | Alternative | Alternative | 21 | 3 | CTG | TGA | TransCirc | No |
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