top of page
Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|64095567|64095733|1|166|0 | circT060530(NE) | T060530 | LRLLVDASGRKGGFPQLHLSNSDDGICVDWNPQLTAEV | LLVDASGRK | No | Alternative | Alternative | 9 | 1 | CTG | TGA | NA | Yes |
chr11|64109541|64109789|1|248|0 | circNM_013280(NE) | NM_013280 | LPPAWRASHGRLVRPHRRGWLMAPSTSSVRPRHRVKAASMAWGRGRGWE | GWLMAPSTSSVRPR | No | Alternative | Junction | 14 | 3 | CTG | TGA | NA | Yes |
chr11|65079352|65079787|2|189,103|0,332 | circCDCA5(NE,1L) | CDCA5 | LAGSLLRRTFSRHTASLPPPPALSCFGFEGLLGAEDLSGVSPVVCSKLTEVPRVCAKPWAPDMTLPGISPPPEKQKRKKKKMPEILISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTLLLWLRGAAGGRRLVRSLASGVLQTHRGPQGLCKALGPRHDSPWNLPTTRETET | LAGSLLR | No | Alternative | Junction | 7 | 2 | CTG | TAA | NA | No |
chr11|65623448|65623628|1|180|0 | circPCNX3(NE) | PCNX3 | LTRLSLQDAGSAGEHLRRGPEQPCGLPGLPAAAQGLLH | LSLQDAGSAGEHLRR | No | Alternative | Alternative | 15 | 1 | CTG | TGA | TransCirc | No |
chr11|65892893|65893067|1|174|0 | NA | FOSL1 | LSLVPQLIARVAAAAETHPLTPLALQPSSLRHCTPPHS | VAAAAETHPLTPLALQPSSLR | No | Junction | Junction | 21 | 1 | CTG | TGA | NA | Yes |
Page 1 of 1
bottom of page