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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|114092714|114092969|1|255|0 | circENST00000408185(NE).A | ENST00000408185 | METRREHAQRTLKSQGKVGGRLGILESEVFILALQTHKRTMA | LGILESEVFILALQTHKR | No | Alternative | Alternative | 18 | 3 | ATG | TGA | NA | No |
chr11|116861840|116862327|2|86,126|0,361 | circSIK3(NE,NE) | SIK3 | LMKEPWRRPSSSICYTSRSSTIKFSSNKFKTLSVLLSHLHLFRLHVKISQPSLPISSRGV | ISQPSLPISSR | No | Alternative | Junction | 11 | 2 | TTG | TGA | TransCirc | No |
chr11|118086841|118087004|1|163|0 | circSMIM35(S1L) | SMIM35 | LLSDPRTCIPPQNQRQAAVEGVGKVLRVSQETQRCLPSACRVGPGHSAPLREPHSAL | CLPSACRVGPGHSAPLR | No | Alternative | Junction | 17 | 3 | CTG | TGA | NA | Yes |
chr11|118086841|118087004|1|163|0 | circSMIM35(S1L) | SMIM35 | LLSDPRTCIPPQNQRQAAVEGVGKVLRVSQETQRCLPSACRVGPGHSAPLREPHSAL | VGPGHSAPLR | No | Alternative | Junction | 10 | 3 | CTG | TGA | NA | Yes |
chr11|119045190|119045435|1|245|0 | circENST00000531886(L2S) | ENST00000531886 | LQKEPVSWREGTITREEWKLPSNLIPFPSPGPISHWQPFSSYPQAKDSEINSDFSQI | EPVSWREGTITR | No | Junction | Junction | 12 | 2 | CTG | TAG | NA | Yes |
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