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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10|121959323|121961517|3|59,49,95|0,1034,2099 | circNSMCE4A(NE,NE,1S) | NSMCE4A | LMLAEADTPMSFFDFVVDPHSFPRTVENIFHVSFIIRDGFARIRLDQDRLPVIEPVITPSQRQQKPSA | LMLAEADTPMSFFDFVVDPHSFPRTVENIFHVSFIIR | No | Junction | Junction | 37 | 2 | TTG | TGA | TransCirc | No |
chr10|121959323|121961517|3|87,153,29|0,177,2165 | circNSMCE4A(NE,NE,1S).A | NSMCE4A | LINLKNLSFKQSLLVLMKKMRDLNITHKLEIKEL | MRDLNITHK | No | Alternative | Alternative | 9 | 1 | TTG | TAG | TransCirc | No |
chr10|124613487|124613804|1|317|0 | circLHPP(NE) | LHPP | LPCMGRHLFPTWVACSPAWALTSAPCSEVQEGGTGLSGLWESPKSQNSPLTMGL | LPCMGRHLFPTWVACSPAWALTSAPCSEVQEGGTGLSGLWESPK | No | Alternative | Alternative | 44 | 1 | CTG | TAA | NA | Yes |
chr10|124681606|124682379|2|33,141|0,632 | NA | ENSG00000258539,FAM53B | MTDGETWTGNALFRLTNRAPASGNACLKRTAHYGTGRQ | APASGNACLKR | Yes | Alternative | Alternative | 11 | 1 | ATG | TGA | riboCIRC,TransCirc | Yes |
chr10|124681606|124682379|2|33,141|0,632 | NA | ENSG00000258539,FAM53B | MTDGETWTGNALFRLTNRAPASGNACLKRTAHYGTGRQ | LTNRAPASGNACLK | Yes | Alternative | Alternative | 14 | 1 | ATG | TGA | riboCIRC,TransCirc | Yes |
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