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PepTransDB

The Maher Lab | Washington University

lncRNA Peptides

Use criteria below to search among 19,871 unique lncRNA peptides:

*Click Transcript to view full ORF and comprehensive information in new page. 

Transcript*
Cancer
Peptide Length
CPC Coding Probability
CPC Label
ORF Length
Chromosome
Start
End
Strand
Max Probability
Gene Name
Conservation Score
PhyloCSF Frame 1
PhyloCSF Frame 2
PhyloCSF Frame 3
No. of Spectra
CNTI Index
CNTI Score
Peptide
Modified Peptide
ORF
lnc-SLC30A9-24:1
CCRC
8
0.878657
coding
82
chr4
42151027
42268110
+
0.761
lnc-SLC30A9-24
1
0
0.898
0
10
noncoding
-0.271340563
SHLLGARR
LAPLRTTPERSWSPTATAVLPGAGSKPRSHLLGARRRKPRRGGAGESSRSFRVRGEAPGAPRHPDTAQHGWKILTKQTNNES
lnc-SLC30A9-24:1
HCC
18
0.878657
coding
82
chr4
42151027
42268110
+
0.3448
lnc-SLC30A9-24
1
0
0.898
0
1
noncoding
-0.271340563
SWSPTATAVLPGAGSKPR
n[230]SWSPTATAVLPGAGSKPR
LAPLRTTPERSWSPTATAVLPGAGSKPRSHLLGARRRKPRRGGAGESSRSFRVRGEAPGAPRHPDTAQHGWKILTKQTNNES
lnc-SLC30A9-24:2
CCRC
17
0.465713
noncoding
82
chr4
42238704
42251239
+
0.9951
lnc-SLC30A9-24
0.717
-4.145
-4.603
-4.76
28
noncoding
-0.334839498
LSGPHLSCLLLNPSWQK
n[230]LSGPHLSCLLLNPSWQK
LSGPHLSCLLLNPSWQKVVISQYFWSKCINQTIMCKGGHRMKEQCSDLEHHATLLQLCRSVAVCACSAPLDELTKQHLRKSP
lnc-SLC30A9-24:2
CCRC
10
0.465713
noncoding
82
chr4
42238704
42251239
+
0.1665
lnc-SLC30A9-24
0.717
-4.145
-4.603
-4.76
1
noncoding
-0.334839498
VVISQYFWSK
n[230]VVISQYFWSK
LSGPHLSCLLLNPSWQKVVISQYFWSKCINQTIMCKGGHRMKEQCSDLEHHATLLQLCRSVAVCACSAPLDELTKQHLRKSP
lnc-SLC34A2-2:1
EOGC
16
0.101896
noncoding
56
chr4
25679888
25713329
+
0.0523
lnc-SLC34A2-2
0.962
-4.121
-4.735
-3.758
1
noncoding
-0.408527448
LTSESQQMAVVSVILK
n[145]LTSESQQM[147]AVVSVILK
MSCGLGAVPGLGSAATGQESRTTQHFQNKSLLCKLTSESQQMAVVSVILKGFCFCF
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