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PepTransDB

The Maher Lab | Washington University

lncRNA Peptides

Use criteria below to search among 19,871 unique lncRNA peptides:

*Click Transcript to view full ORF and comprehensive information in new page. 

Transcript*
Cancer
Peptide Length
CPC Coding Probability
CPC Label
ORF Length
Chromosome
Start
End
Strand
Max Probability
Gene Name
Conservation Score
PhyloCSF Frame 1
PhyloCSF Frame 2
PhyloCSF Frame 3
No. of Spectra
CNTI Index
CNTI Score
Peptide
Modified Peptide
ORF
lnc-SLMAP-4:1
HCC
10
0.474665
noncoding
50
chr3
57941817
57942304
+
0.9126
lnc-SLMAP-4
1
0
0
0
14
noncoding
-0.34073101
LQELHPEAYR
n[230]LQELHPEAYR
LQELHPEAYRSWHPVHGKCWTQHKWFPVFMCPAKTEWLDGKHVAFGMVKA
lnc-SLMAP-4:1
OSCC
9
0.474665
noncoding
129
chr3
57941817
57942304
+
0.8954
lnc-SLMAP-4
1
0
0
0
1
noncoding
-0.34073101
ISFELFADK
n[145]ISFELFADK
MVNPTMVFDIAVNDKPLGRISFELFADKFPKTTENFHALSTGEKRFGCKGSCFHRIIPGFVCQGGDFTCHTGGTSIYREKFDCKNFILKHIGPGILSMANAGPNTSGSQFSCALPRLSGWMASMWPLAW
lnc-SLMAP-4:1
OV
9
0.474665
noncoding
129
chr3
57941817
57942304
+
0.9986
lnc-SLMAP-4
1
0
0
0
72
noncoding
-0.34073101
ISFELFADK
n[145]ISFELFADK
MVNPTMVFDIAVNDKPLGRISFELFADKFPKTTENFHALSTGEKRFGCKGSCFHRIIPGFVCQGGDFTCHTGGTSIYREKFDCKNFILKHIGPGILSMANAGPNTSGSQFSCALPRLSGWMASMWPLAW
lnc-SLMAP-4:1
OV
13
0.474665
noncoding
129
chr3
57941817
57942304
+
0.1173
lnc-SLMAP-4
1
0
0
0
1
noncoding
-0.34073101
TTENFHALSTGEK
n[145]TTENFHALSTGEK
MVNPTMVFDIAVNDKPLGRISFELFADKFPKTTENFHALSTGEKRFGCKGSCFHRIIPGFVCQGGDFTCHTGGTSIYREKFDCKNFILKHIGPGILSMANAGPNTSGSQFSCALPRLSGWMASMWPLAW
lnc-SLTM-1:2
HCC
8
0.0928891
noncoding
64
chr15
58857536
58868377
-
0.9387
lnc-SLTM-1
0.07
0
0
0
1
coding
0.761398901
GLDHSSQR
n[230]GLDHSSQR
LVTPASLLTLPYSRAPLLLEAPQGLCTGCSRGLDHSSQRSLRGCPLLITQAPHSPHRARESVRY
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