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PepTransDB

The Maher Lab | Washington University

lncRNA Peptides

Use criteria below to search among 19,871 unique lncRNA peptides:

*Click Transcript to view full ORF and comprehensive information in new page. 

Transcript*
Cancer
Peptide Length
CPC Coding Probability
CPC Label
ORF Length
Chromosome
Start
End
Strand
Max Probability
Gene Name
Conservation Score
PhyloCSF Frame 1
PhyloCSF Frame 2
PhyloCSF Frame 3
No. of Spectra
CNTI Index
CNTI Score
Peptide
Modified Peptide
ORF
lnc-SMDT1-3:27
OV
14
0.767515
coding
69
chr22
42269511
42283402
+
0.2771
lnc-SMDT1-3
0.879
-2.219
-0.655
-3.273
2
noncoding
-0.276184688
FSVSGHAWEAAAGR
n[145]FSVSGHAWEAAAGR
LAAELFANLQASQASTVAGGAPSPGLRSAKPHPSLGPRFSVSGHAWEAAAGRSSLQRPQAAQAKRMMER
lnc-SMDT1-3:27
OV
27
0.767515
coding
69
chr22
42269511
42283402
+
0.9453
lnc-SMDT1-3
0.879
-2.219
-0.655
-3.273
4
noncoding
-0.276184688
LAAELFANLQASQASTVAGGAPSPGLR
n[145]LAAELFANLQASQASTVAGGAPSPGLR
LAAELFANLQASQASTVAGGAPSPGLRSAKPHPSLGPRFSVSGHAWEAAAGRSSLQRPQAAQAKRMMER
lnc-SMDT1-3:27
OV
17
0.767515
coding
69
chr22
42269511
42283402
+
0.7233
lnc-SMDT1-3
0.879
-2.219
-0.655
-3.273
2
noncoding
-0.276184688
SSLQRPQAAQAKRMMER
n[145]SSLQRPQAAQAKRM[147]M[147]ER
LAAELFANLQASQASTVAGGAPSPGLRSAKPHPSLGPRFSVSGHAWEAAAGRSSLQRPQAAQAKRMMER
lnc-SMDT1-3:28
PRAD
22
0.767515
coding
65
chr22
42269703
42283402
+
0.9979
lnc-SMDT1-3
0.663
-4.058
0.263
-2.57
9
noncoding
-0.276184688
IEVWHPNLGCIHLSPWTMGPLR
IEVWHPNLGCIHLSPWTM[147]GPLR
LRRDLAPNPPGPTETSALQVCPSTLPSRIEVWHPNLGCIHLSPWTMGPLRCKEFNLSQVTQFGRG
lnc-SMIM12-1:1
CCRC
8
0.23937
noncoding
39
chr1
34439615
34685309
-
0.9923
lnc-SMIM12-1
0.048
-5.169
-4.326
-5.172
1
noncoding
-0.335750956
MLVEEDIK
n[230]MLVEEDIK
LFTYSCVTLGKSLCLSLLICRMLVEEDIKSNYHIVVLGG
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