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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|70831538|70833273|-|3|circRNA|GRSF1|NM_001098477|5,4,3 | circGRSF1(5,4,3) | GRSF1 | LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRLQNPQR | EEIGNRLQNPQR | No | Junction | Junction | 12 | 3 | CTG | TGA | TransCirc | No |
chr4|71349911|71357187|+|2|circRNA|SLC4A4|ENST00000264485.9|5,6 | circSLC4A4(5,6) | SLC4A4 | MIVDHQIETGLLKPELKDKVTYTLLRKHRHQTKKSNLRSLADIGKTVSSASRMFTNPDNGGSSLKKKWNRVGKDGASPMWPHCPFIVYLS | MFTNPDNGGSSLKK | No | Junction | Junction | 14 | 3 | ATG | TGA | TransCirc | No |
chr4|71447645|71497692|+|8|circRNA|SLC4A4|ENST00000264485.9|9,10,11,12,13,14,15,16 | circSLC4A4(9,10,11,12,13,14,15,16) | SLC4A4 | LSKKECSKYGGNLVGNNCNFVPDITLMSFILFLGTYTSSMALKKFKTSPYFPTTVLVHSLRS | FKTSPYFPTTVLVHSLR | No | Junction | Junction | 17 | 1 | TTG | TAA | TransCirc | No |
chr4|73405115|73408805|+|3|circRNA|ALB|ENST00000441319.5|3,4,5 | circALB(3,4,5) | ALB | LETNYAQLQLFVKPMVKWLTAVQNKNLREMNASCNTKMTTQTSPDW | WLTAVQNK | Yes | Alternative | Alternative | 8 | 2 | TTG | TGA | TransCirc | No |
chr4|73409362|73412015|+|1|ciRNA|ALB|ENST00000621085.4|5 | ciALB(5) | ALB | MLSRNCQLNCICSSFLPSTPPKSTKFMKKNSPNIKLYTDKQAMIGFGKEVTFT | NCQLNCICSSFLPSTPPKSTK | Yes | Alternative | Alternative | 21 | 1 | ATG | TGA | NA | No |
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